Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3862 |
Symbol | livJ |
ID | 6270279 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 3587729 |
End bp | 3588832 |
Gene Length | 1104 bp |
Protein Length | 367 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641727718 |
Product | high-affinity branched-chain amino acid ABC transporter, periplasmic Leu/Ile/Val-binding protein LivJ |
Protein accession | YP_001882153 |
Protein GI | 187730862 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 44 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATAA AGGGTAAAGC GTTACTGGCA GGATGTATCG CGCTGGCATT CAGCAATATG GCTCTGGCAG AAGATATTAA AGTCGCGGTC GTGGGCGCAA TGTCCGGTCC GGTTGCGCAG TACGGTGACC AGGAGTTTAC CGGCGCAGAG CAGGCGGTTG CGGATATCAA CGCTAAAGGC GGCATTAAAG GCAACAAACT GCAAATCGTA AAATATGACG ATGCCTGTGA CCCGAAACAG GCGGTTGCGG TGGCGAACAA AGTCGTTAAC GACGGCATTA AATATGTGAT TGGTCACCTC TGTTCTTCAT CAACGCAGCC TGCGTCTGAT ATCTACGAAG ACGAAGGCAT TTTAATGATC ACCCCAGCGG CAACCTCGCC GGAGCTGACC GCCCGTGGCT ATCAGCTGAT CCTGCGCACC ACCGGCCTGG ACTCCGACCA GGGGCCGACG GCGGCGAAAT ATATTCTTGA GAAAGTGAAA CCGCAGCGTA TTGCTATCGT TCACGACAAA CAGCAATACG GCGAAGGTCT GGCGCGAGCG GTGCAGGACG GCCTGAAGAA AGGCAATGCT AACGTGGTGT TCTTTGATGG TATCACCGCC GGGGAAAAAG ATTTCTCAAC GCTGGTGGCG CGTCTGAAAA AAGAGAATAT CGACTTCGTT TACTACGGCG GTTATCACCC GGAAATGGGG CAAATCCTGC GTCAGGCACG CGCGGCAGGG CTGAAAACTC AGTTTATGGG GCCGGAAGGT GTGGCTAACG TTTCGCTGTC TAACATTGCG GGCGAATCAG CGGAAGGGCT GCTGGTGACC AAGCCGAAGA ACTACGATCA GGTTCCGGCG AACAAACCCA TTGTTGACGC CATCAAAGCG AAAAAACAGG ACCCAAGCGG CGCATTCGTT TGGACCACCT ACGCCGCGCT GCAATCTTTG CAGGCGGGCC TGAATCAGTC TGACGATCCG GCTGAGATCG CCAAATACCT GAAAGCGAAC TCCGTGGATA CCGTGATGGG TCCGCTGACG TGGGATGAGA AAGGTGATCT GAAAGGCTTT GAGTTCGGCG TATTTGACTG GCACGCCAAC GGCACGGCGA CCGATGCGAA GTAA
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Protein sequence | MNIKGKALLA GCIALAFSNM ALAEDIKVAV VGAMSGPVAQ YGDQEFTGAE QAVADINAKG GIKGNKLQIV KYDDACDPKQ AVAVANKVVN DGIKYVIGHL CSSSTQPASD IYEDEGILMI TPAATSPELT ARGYQLILRT TGLDSDQGPT AAKYILEKVK PQRIAIVHDK QQYGEGLARA VQDGLKKGNA NVVFFDGITA GEKDFSTLVA RLKKENIDFV YYGGYHPEMG QILRQARAAG LKTQFMGPEG VANVSLSNIA GESAEGLLVT KPKNYDQVPA NKPIVDAIKA KKQDPSGAFV WTTYAALQSL QAGLNQSDDP AEIAKYLKAN SVDTVMGPLT WDEKGDLKGF EFGVFDWHAN GTATDAK
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