Gene SbBS512_E3681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E3681 
SymbolrpoA 
ID6271128 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand- 
Start bp3422043 
End bp3423032 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content52% 
IMG OID641727545 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_001881980 
Protein GI187731728 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.214877 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGGGTT CTGTGACAGA GTTTCTAAAA CCGCGCCTGG TTGATATCGA GCAAGTGAGT 
TCGACGCACG CCAAGGTGAC CCTTGAGCCT TTAGAGCGTG GCTTTGGCCA TACTCTGGGT 
AACGCACTGC GCCGTATTCT GCTCTCATCG ATGCCGGGTT GCGCGGTGAC CGAGGTTGAG 
ATTGATGGTG TACTACATGA GTACAGCACC AAAGAAGGCG TTCAGGAAGA TATCCTGGAA 
ATCCTGCTCA ACCTGAAAGG GCTGGCGGTG AGAGTTCAGG GCAAAGATGA AGTTATTCTT 
ACCTTGAATA AATCTGGCAT TGGCCCTGTG ACTGCAGCCG ATATCACCCA CGACGGTGAT 
GTCGAAATCG TCAAGCCGCA GCACGTGATC TGCCACCTGA CCGATGAGAA CGCGTCTATT 
AGCATGCGTA TCAAAGTTCA GCGCGGTCGT GGTTATGTGC CGGCTTCTAC CCGAATTCAT 
TCGGAAGAAG ATGAGCGCCC AATCGGCCGT CTGCTGGTCG ACGCATGCTA CAGCCCTGTG 
GAGCGTATTG CCTACAATGT TGAAGCAGCG CGTGTAGAAC AGCGTACCGA CCTGGACAAG 
CTGGTCATCG AAATGGAAAC CAACGGCACA ATCGATCCTG AAGAGGCGAT TCGTCGTGCG 
GCAACCATTC TGGCTGAACA ACTGGAAGCT TTCGTTGACT TACGTGATGT ACGTCAGCCT 
GAAGTGAAAG AAGAGAAACC AGAGTTCGAT CCGATCCTGC TGCGCCCTGT TGACGATCTG 
GAATTGACTG TCCGCTCTGC TAACTGCCTT AAAGCAGAAG CTATCCACTA TATCGGTGAT 
CTGGTACAAC GTACCGAGGT TGAGCTCCTT AAAACGCCTA ACCTTGGTAA AAAATCTCTT 
ACTGAGATTA AAGACGTGCT GGCTTCCCGT GGACTGTCTC TGGGCATGCG CCTGGAAAAC 
TGGCCACCGG CAAGCATCGC TGACGAGTAA
 
Protein sequence
MQGSVTEFLK PRLVDIEQVS STHAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE 
IDGVLHEYST KEGVQEDILE ILLNLKGLAV RVQGKDEVIL TLNKSGIGPV TAADITHDGD 
VEIVKPQHVI CHLTDENASI SMRIKVQRGR GYVPASTRIH SEEDERPIGR LLVDACYSPV 
ERIAYNVEAA RVEQRTDLDK LVIEMETNGT IDPEEAIRRA ATILAEQLEA FVDLRDVRQP 
EVKEEKPEFD PILLRPVDDL ELTVRSANCL KAEAIHYIGD LVQRTEVELL KTPNLGKKSL 
TEIKDVLASR GLSLGMRLEN WPPASIADE