Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3541 |
Symbol | degS |
ID | 6273214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 3292775 |
End bp | 3293842 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641727412 |
Product | serine endoprotease |
Protein accession | YP_001881858 |
Protein GI | 187731547 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.360038 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTGTGA AGCTCTTACG TTCCGTTGCG ATTGGATTAA TTGTCGGCGC TATTCTGCTG GTTGCCATGC CTTCGCTGCG CAGCCTTAAC CCGCTTTCCA CTCCGCAATT TGACAGTACC GATGAGACGC CTGCCAGCTA TAATCTGGCG GTTCGCCGCG CCGCGCCAGC GGTGGTTAAC GTTTACAACC GTGGTGTGAA CACCAACTCT CACAACCAGC TTGAGATCCG CACCCTGGGA TCCGGTGTAA TCATGGATCA ACGCGGTTAT ATCATCACCA ATAAACACGT CATCAACGAC GCCGATCAGA TCATCGTCGC CTTACAGGAT GGACGTGTAT TTGAAGCATT GCTGGTGGGA TCTGACTCTC TAACCGATCT GGCGGTACTT AAAATTAATG CCACTGGCGG TTTACCTACC ATTCCAATTA ATGCACGTCG CGTACCGCAC ATTGGCGACG TAGTACTGGC GATCGGTAAC CCGTACAACC TCGGGCAGAC CATTACCCAA GGGATTATTA GTGCCACGGG TCGAATCGGT CTGAACCCTA CCGGGCGGCA AAACTTCCTA CAAACCGATG CTTCCATTAA CCACGGTAAC TCTGGTGGCG CGCTGGTGAA CTCGCTGGGA GAACTGATGG GCATTAACAC GCTGTCGTTT GATAAGAGTA ACGATGGCGA AACGCCGGAA GGTATCGGCT TTGCGATTCC TTTCCAGTTA GCAACCAAAA TTATGGATAA GCTGATCCGC GATGGGCGCG TGATCCGCGG CTACATTGGC ATTGGTGGAC GTGAGATCGC ACCACTGCAC GCGCAGAGCG GTGGTATAGA TCAACTGCAA GGGATCGTGG TTAATGAAGT GTCACCTGAC GGCCCGGCGG CGAATGCGGG TATTCAGGTC AACGATCTGA TTATTTCGGT GGATAACAAA CCGGCCATCT CTGCTCTGGA GACGATGGAT CAGGTGGCAG AAATTCGCCC TGGTTCGGTG ATCCCGGTTG TAGTGATGCG TGATGATAAG CAGTTAACGC TGCAGGTCAC CATTCAGGAA TATCCGGCAA CCAATTAA
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Protein sequence | MFVKLLRSVA IGLIVGAILL VAMPSLRSLN PLSTPQFDST DETPASYNLA VRRAAPAVVN VYNRGVNTNS HNQLEIRTLG SGVIMDQRGY IITNKHVIND ADQIIVALQD GRVFEALLVG SDSLTDLAVL KINATGGLPT IPINARRVPH IGDVVLAIGN PYNLGQTITQ GIISATGRIG LNPTGRQNFL QTDASINHGN SGGALVNSLG ELMGINTLSF DKSNDGETPE GIGFAIPFQL ATKIMDKLIR DGRVIRGYIG IGGREIAPLH AQSGGIDQLQ GIVVNEVSPD GPAANAGIQV NDLIISVDNK PAISALETMD QVAEIRPGSV IPVVVMRDDK QLTLQVTIQE YPATN
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