| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3406 |
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| Symbol | gspJ |
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| ID | 6268468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 3168015 |
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| End bp | 3168614 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641727295 |
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| Product | general secretion pathway protein GspJ |
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| Protein accession | YP_001881744 |
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| Protein GI | 187731137 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | GTGAGAAGGA CTCGCGCTGG TTTCACGTTA CTGGAAATGT TGGTGGCAAT TGCCATTTTT
GCCTCGCTGG CACTGATGGC GCAGCAGGTG ACTAACGGCG TCACGCGCGT GAATAGCGCC
GTCGCCGATC ACGATCAAAA ACTAAACCTC ATGCAGCAAA CGATGAGTTT TCTGACCCAC
GATCTGACCC AAATGATGCC GCGTCCGGTA AGAGGCGATC AGGGCCAGCG TGAACCAGCT
TTACTGGCTG GCGCTGGCGT GCTGGCGTCT GAGAGTGAAG GAATGCGTTT TGTGCGCGGC
GGTGTGGTTA ACCCGTTGAT GCGTCTGCCG CGCAGCAATC TGCTCACCGT CGGTTACCGC
ATTCATGACG GTTATCTCGA ACGGTTAGCC TGGCCGCTGA CCGATGCCGC AGGCAGCGTG
AAGCCGACAA TGCAAAAGTT GATTCCGGCC GATTCGCTCC GTTTGCAGTT CTACGACGGC
ACGCGCTGGC AGGAGAGCTG GTCGTCAGTA CAGGCGATCC CTGTGGCGGT ACGCATGACC
CTGCATTCGC CGCAATGGGG CGAGATTGAA CGCATCTGGT TGTTACGCGG GCCGCAATAA
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| Protein sequence | MRRTRAGFTL LEMLVAIAIF ASLALMAQQV TNGVTRVNSA VADHDQKLNL MQQTMSFLTH
DLTQMMPRPV RGDQGQREPA LLAGAGVLAS ESEGMRFVRG GVVNPLMRLP RSNLLTVGYR
IHDGYLERLA WPLTDAAGSV KPTMQKLIPA DSLRLQFYDG TRWQESWSSV QAIPVAVRMT
LHSPQWGEIE RIWLLRGPQ
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