| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3404 |
|---|
| Symbol | gspL |
|---|
| ID | 6269867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 3165860 |
|---|
| End bp | 3167038 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641727294 |
|---|
| Product | GspL-like protein |
|---|
| Protein accession | YP_001881743 |
|---|
| Protein GI | 187733759 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3297] Type II secretory pathway, component PulL |
|---|
| TIGRFAM ID | [TIGR01709] general secretion pathway protein L |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTTCCA TCCTTGAGAT TTTTTTCCCG CTTTGCGCCG CTGATCCCAT CCATTGGCAG
CGCCGTACAC CCGATGTGGA GCACGGTATC TGGTCTGACG TTGCTAACGA ACAGCTCCAG
CAATGGCTGC AAACCGATGC GATTCGACTC TACATTCCCG GCGAATGGAT CAGCGTCTGG
CAGGTTGAAC TGCCTGATGT CGCCCGTAAG CAGATACCGA CCATTCTGCC CGCCTTACTG
GAAGAAGAGC TGAACCAGGA TATCGATGAA CTGCATTTCG CCCCGTTGAA TATCGACCAG
CAACTGGCAA CCGTAGCAGT GATTCACCAA CAGCATATGC GCAACATTGC GCAGTGGTTG
CAGGAAAACG GCATCACCCG CGCTACCGTC GCGCCAGACT GGATGTCCAT TCCTTGTGGG
GTTATGGCTG GCGATGCGCA ACGGGTTATC TGCCGCATTG ATGAATGCCG GGGATGGAGC
GCCGGGCGGG CGCTGGCTCC GGTCATGTTC CGCGCCCAGC TCAATGAGCA GGATTTACCG
CTTTCGCTAA CCGTAGTCGG CATTGCACCG GAAAAGCTAT CAGCATGGGC TGGCGCAGAC
GCTGAACGCC TGACCGTTAC AGCTCTGCCC GCCGTTACCA CTTATGGCGA ACCGGAAGGG
AACCTGCTGA CAGGGCCGTG GCAGCCTCGC GTCAGCTACC GAAAACAGTG GGCGCGCTGG
CGGGTGATGA TTCTGCCGAT ATTGCTGATT CTAGTTGCGC TGGCAGTGGA GCGGGGCGTG
ACGTTATGGA GCGTCAGCGA ACAGGTGGCG CAAAGCCGCA CCCAGGCGGA GGAACAGTTC
TTAACGTTGT TCCCGGAGCA GAAGCGGATT GTGAATTTAC GCTCTCAGGT GACGATGGCG
CTGAAAAAAT ATCGCCCACA GGCCGACGAT ACCCGGCTGC TCGCCGAGTT GTCAGCGATA
GCCAGCACCC TGAAATCAGC GTCACTTTCC GACATCGAAA TGCGTGGTTT TACCTTTGAT
CAAAAACGCC AGATACTTCA CCTCCAGCTA CGGGCCGCGA ACTTTGCCAG TTTCGACAAA
CTGCGTAGTG CACTGGCAAC CGATTATGTT GTGCAACAGG ACGCGTTACA GAAAGAGGGT
GATGCGGTTT CCGGCGGCGT AACGTTGCGG AGGAAATAA
|
|---|
| Protein sequence | MSSILEIFFP LCAADPIHWQ RRTPDVEHGI WSDVANEQLQ QWLQTDAIRL YIPGEWISVW
QVELPDVARK QIPTILPALL EEELNQDIDE LHFAPLNIDQ QLATVAVIHQ QHMRNIAQWL
QENGITRATV APDWMSIPCG VMAGDAQRVI CRIDECRGWS AGRALAPVMF RAQLNEQDLP
LSLTVVGIAP EKLSAWAGAD AERLTVTALP AVTTYGEPEG NLLTGPWQPR VSYRKQWARW
RVMILPILLI LVALAVERGV TLWSVSEQVA QSRTQAEEQF LTLFPEQKRI VNLRSQVTMA
LKKYRPQADD TRLLAELSAI ASTLKSASLS DIEMRGFTFD QKRQILHLQL RAANFASFDK
LRSALATDYV VQQDALQKEG DAVSGGVTLR RK
|
|---|
| |