Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3320 |
Symbol | |
ID | 6272065 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 3089227 |
End bp | 3089886 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641727217 |
Product | channel protein, hemolysin III family |
Protein accession | YP_001881669 |
Protein GI | 187731508 |
COG category | [R] General function prediction only |
COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
Num covering plasmid clones | 41 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTCAGA AGCCCCTCAT TAAGCAGGGA TATTCGCTGG CAGAGGAAAT TGCCAACAGC GTCAGTCACG GCATTGGGTT GGTGTTTGGT ATCGTTGGGC TGGTGTTGCT ACTGGTTCAG GCGGTGGATC TCAATGCCAG CGCCACAGCG ATAACCAGCT ACAGCCTCTA TGGCGGCAGT ATGATCCTGC TGTTCCTCGC TTCGACGCTC TATCACGCCA TTCCTCATCA ACGGGCAAAA ATGTGGCTGA AGAAATTTGA CCATTGCGCT ATTTACCTGT TGATTGCCGG AACCTACACG CCGTTTTTGC TGGTGGGGCT GGATTCTCCG TTAGCGCGCG GGTTGATGAT TGTTATCTGG AGCCTGGCAT TGCTGGGGAT TCTGTTTAAA CTGACCATCG CGCACCGATT CAAAATTTTA TCTCTGGTGA CCTATCTGGC GATGGGCTGG CTGTCGCTGG TGGTAATTTA TGAAATGGCA GTTAAGCTCG CGGCGGGCAG CGTTACCTTA CTGGCGGTAG GCGGCGTGGT TTATTCGCTC GGAGTGATTT TCTATGTCTG CAAACGCATT CCCTACAATC ATGCCATCTG GCACGGCTTC GTGCTCGGCG GCAGTGTGTG CCACTTTCTG GCGATCTATT TGTATATTGG GCAGGCGTAA
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Protein sequence | MVQKPLIKQG YSLAEEIANS VSHGIGLVFG IVGLVLLLVQ AVDLNASATA ITSYSLYGGS MILLFLASTL YHAIPHQRAK MWLKKFDHCA IYLLIAGTYT PFLLVGLDSP LARGLMIVIW SLALLGILFK LTIAHRFKIL SLVTYLAMGW LSLVVIYEMA VKLAAGSVTL LAVGGVVYSL GVIFYVCKRI PYNHAIWHGF VLGGSVCHFL AIYLYIGQA
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