| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E3312 |
|---|
| Symbol | recJ |
|---|
| ID | 6271080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | - |
|---|
| Start bp | 3083111 |
|---|
| End bp | 3084844 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641727209 |
|---|
| Product | ssDNA exonuclease RecJ |
|---|
| Protein accession | YP_001881661 |
|---|
| Protein GI | 187732306 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAACAAC AGATACAACT TCGTCGCCGT GAAGTCGATG AAACGGCAGA CTTGCCCGCT
GAATTGCCTC CCTTGCTGCG CCGTTTATAC GCCAGCCGGG GAGTACGCAG TGCGCAAGAA
CTGGAACGCA GTGTTAAAGG TATGTTGCCC TGGCAGCAAC TAAGCGGTGT CGAAAAGGCC
GTTGAGATCC TTTACAACGC TTTTCGCGAA GGAACGCGGA TTATTGTGGT CGGTGATTTC
GACGCCGACG GCGCGACCAG CACGGCTCTA AGCGTGCTGG CGATGCGCCC GCTTGGTTGC
AGCAATATCG ACTACCTGGT ACCAAACCGT TTCGAAGACG GTTACGGCTT AAGCCCGGAA
GTGGTCGATC AGGCCCATGC CCGTGGCGCG CAGTTAATTG TCACGGTGGA TAACGGTATT
TCCTCCCATG CGGGGGTTGA ACACGCTCGC TCGTTGGGCA TTCCGGTTAT TGTTACCGAT
CACCATTTGC CAGGCGAAAC ATTACCCGCG GCGGAAGCGA TCATTAACCC TAACTTGCGC
GACTGTAATT TCCCGTCGAA ATCACTGGCA GGTGTGGGTG TGGCGTTTTA TCTGATGCTG
GCGCTGCGCA CCTTTTTGCG CGATCAGGGC TGGTTTGATG AGCGCGGCAT CGCAATTCCT
AACCTGGCAG AACTGCTGGA TCTGGTCGCG CTGGGGACAG TGGCGGACGT CGTGCCGCTG
GACGCTAATA ATCGCATTCT GACCTGGCAG GGGATGAGTC GCATCCGTGC CGGAAAGTGC
CGTCCAGGGA TTAAAGCTCT GCTGGAAGTG GCAAACCGTG ATGCACAAAA ACTCGCCGCC
AGCGATTTAG GTTTTGCGCT GGGGCCACGT CTCAATGCTG CCGGGCGACT GGACGATATG
TCCGTCGGTG TGGCGCTGTT GCTGTGCGAC AACATCGGCG AAGCGCGCGT GCTGGCAAAT
GAACTCGATG CGCTAAATCA GACGCGAAAA GAGATCGAAC AAGGAATGCA GATTGAAGCC
TTGACCCTGT GCGAGAAACT GGAGCGAAGT CGCGACACGC TACCCGGCGG GCTGGCAATG
TATCACCCCG AATGGCATCA GGGCGTTGTC GGTATTCTGG CTTCGCGCAT CAAAGAGCGT
TTTCACCGTC CGGTTATCGC CTTTGCGCCA GCAGGTGATG GTACGCTGAA AGGTTCCGGT
CGCTCCATTC AGGGGCTGCA TATGCGTGAT GCGCTGGAGC GATTAGACAC ACTCTACCCC
GGTATGATGC TGAAGTTTGG CGGTCATGCG ATGGCGGCGG GTTTGTCGCT GGAAGAGGAT
AAATTCGAAC TCTTTCAACA ACGGTTTGGC GAGCTGGTTA CCGAGTGGCT GGACCCTTCG
CTATTGCAAG GCGAAGTGGT GTCAGACGGC CCGTTAAGCC CGGCCGAAAT GACCATGGAA
GTGGCGCAGC TGCTGCGCGA TGCTGGCCCG TGGGGGCAGA TGTTCCCGGA GCCGCTGTTT
GATGGTCATT TCCGTCTGCT GCAACAGCGG CTGGTGGGCG AACGTCATTT GAAAGTCATG
GTCGAACCGG TCGGCGGCGG TCCGCTGCTG GATGGTATTG CTTTTAATGT CGATACCGCC
CTCTGGCCGG ATAACGGCGT GCGCGAAGTG CAACTGGCTT ACAAGCTCGA TATCAACGAG
TTTCGCGGCA ACCGCAGCCT GCAAATTATC ATCGACAATA TCTGGCCAAT TTAG
|
|---|
| Protein sequence | MKQQIQLRRR EVDETADLPA ELPPLLRRLY ASRGVRSAQE LERSVKGMLP WQQLSGVEKA
VEILYNAFRE GTRIIVVGDF DADGATSTAL SVLAMRPLGC SNIDYLVPNR FEDGYGLSPE
VVDQAHARGA QLIVTVDNGI SSHAGVEHAR SLGIPVIVTD HHLPGETLPA AEAIINPNLR
DCNFPSKSLA GVGVAFYLML ALRTFLRDQG WFDERGIAIP NLAELLDLVA LGTVADVVPL
DANNRILTWQ GMSRIRAGKC RPGIKALLEV ANRDAQKLAA SDLGFALGPR LNAAGRLDDM
SVGVALLLCD NIGEARVLAN ELDALNQTRK EIEQGMQIEA LTLCEKLERS RDTLPGGLAM
YHPEWHQGVV GILASRIKER FHRPVIAFAP AGDGTLKGSG RSIQGLHMRD ALERLDTLYP
GMMLKFGGHA MAAGLSLEED KFELFQQRFG ELVTEWLDPS LLQGEVVSDG PLSPAEMTME
VAQLLRDAGP WGQMFPEPLF DGHFRLLQQR LVGERHLKVM VEPVGGGPLL DGIAFNVDTA
LWPDNGVREV QLAYKLDINE FRGNRSLQII IDNIWPI
|
|---|
| |