Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E2976 |
Symbol | |
ID | 6272870 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 2782618 |
End bp | 2783355 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641726918 |
Product | outer membrane protein assembly complex subunit YfiO |
Protein accession | YP_001881383 |
Protein GI | 187732232 |
COG category | [R] General function prediction only |
COG ID | [COG4105] DNA uptake lipoprotein |
TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.0410955 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGCGCA TGAAATATCT GGTGGCAGCC GCCACACTAA GCCTGTTTTT GGCGGGTTGC TCGGGGTCAA AGGAAGAAGT ACCTGATAAT CCACCAAATG AAATTTACGC GACTGCACAA CAAAAGCTGC AGGACGGTAA CTGGAGACAG GCAATAACGC AACTGGAAGC ATTAGATAAT CGCTATCCGT TTGGTCCGTA TTCGCAGCAG GTGCAGCTGG ATCTCATCTA CGCCTACTAT AAAAACGCCG ATTTGCCGTT AGCACAGGCT GCCATCGATC GTTTTATTCG CCTTAACCCG ACCCATCCGA ATATCGATTA TGTCATGTAC ATGCGTGGCC TGACCAATAT GGCGCTGGAT GACAGTGCGC TGCAAGGGTT CTTTGGCGTT GACCGTAGCG ATCGCGATCC TCAACATGCA CGAGCTGCGT TTAGTGACTT TTCCAAACTG GTGCGCGGCT ATCCGAACAG TCAGTACACT ACCGATGCAA CCAAACGTCT GGTATTCCTG AAAGATCGTC TGGCGAAATA TGAATACTCC GTTGCCGAGT ACTATACAGA ACGTGGTGCA TGGGTTGCCG TCGTTAACCG CGTAGAAGGC ATGTTGCGCG ACTACCCGGA TACCCAGGCT ACGCGTGATG CGCTGCCACT GATGGAAAAT GCATACCGTC AGATGCAGAT GAATGCGCAA GCTGAAAAAG TAGCGAAAAT CATCGCCGCA AACAGCAGCA ATACATAA
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Protein sequence | MTRMKYLVAA ATLSLFLAGC SGSKEEVPDN PPNEIYATAQ QKLQDGNWRQ AITQLEALDN RYPFGPYSQQ VQLDLIYAYY KNADLPLAQA AIDRFIRLNP THPNIDYVMY MRGLTNMALD DSALQGFFGV DRSDRDPQHA RAAFSDFSKL VRGYPNSQYT TDATKRLVFL KDRLAKYEYS VAEYYTERGA WVAVVNRVEG MLRDYPDTQA TRDALPLMEN AYRQMQMNAQ AEKVAKIIAA NSSNT
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