| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E2894 |
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| Symbol | pbpC |
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| ID | 6271844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 2694459 |
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| End bp | 2696771 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 641726838 |
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| Product | penicillin-binding protein 1C |
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| Protein accession | YP_001881310 |
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| Protein GI | 187732591 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4953] Membrane carboxypeptidase/penicillin-binding protein PbpC |
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| TIGRFAM ID | [TIGR02073] penicillin-binding protein 1C |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTCGCT TGTTAACCAA ACGCGGCTGC TGGATAACGC TGGCAGCTGT GCCATTTCTC
CTTTTTCTTG CAGCGTGGGG AGCAGATAAA CTCTGGCCTC TACCGCTGCA TGAAGTCAAT
CCCGCACGAG TGGTCGTGGC GCAGGATGGT ACGCCGCTCT GGCGCTTCGC CGATGCTGAT
GGCATCTGGC GTTATCCGGT AACAATCGAA GATGTGTCTC CACGTTACCT TGAAGCGCTG
ATCAATTATG AAGATCGCTG GTTCTGGAAG CATCCGGGGG TGAATCCATT CTCGGTGGCG
CGCGCAGCAT GGCAAGATCT CACTTCGGGA CGGGTTATTT CTGGTGGCAG CACGCTCACT
ATGCAGGTTG CTCGTCTGCT TGATCCTCAC CCCAAAACAT TTGGTGGCAA AATTCTCCAG
CTCTGGCGCG CGTTGCAACT GGAGTGGCAT TTGTCTAAGC GTGAAATTCT GATCTTGTAT
CTTAACCGCG CTCCGTTTGG CGGTACGTTG CAGGGGATCG GTGCGGCAAG TTGGGCTTAT
CTCGGAAAAT CGCCTGCGAA TTTAAGCTAT TCCGAGGCGG CAATGCTGGC GGTGTTACCG
CAAGCGCCCA GCCGAGTGCG CCCGGATCGT TGGCCGGAGC GTGCCGAAGC CGCGCGTAAT
AAAGTGCTCG AACGGATGGC CGTGCAAGGT GTGTGGTCCC GTGAGCAGGT AAAAGAGTCA
AGGGAAGAAC CCATCTGGCT GGCACCCCGA CAAATGCCGC AACTGGCACC GCTGTTTTCG
CGCATGATGC TCGGTAAAAG CAAAAGCGAC AAAATCGTTA CTACGCTGGA TGCCGGTCTT
CAACGACGTC TGGAAGAACT GGCGCAAAAC TGGAAAGGGC GGTTGCCACC GCGCAGCTCA
CTGGCGATGA TCGTGGTTGA TCATACCGAT ATGCGTGTTC GCGGCTGGGT GGGATCGGTT
GATCTCAACG ATGATTCACG CTTTGGTCAT GTTGATATGG TCAATGCGAT CCGATCGCCA
GGATCGGTGC TCAAACCGTT TGTTTATGGT CTGGCGCTGG ATGAAGGCTT GATCCACCCG
GCATCACTGC TGCAAGACGT CCCCCGGCGC ACCGGTGATT ATCGACCAGG TAACTTTGAT
AGCGGTTTTC ATGGCCCGAT CAGCATGAGC GAGGCGCTGG TGCGCTCGCT GAACTTACCT
GCTGTGCAGG TGCTGGAAGC CTATGGACCG AAACGGTTTG CGGCAAAGTT ACGCAATGTT
GGATTGCCGT TATATTTGCC CAACGGTGCT GCGCCGAATC TTTCACTCAT TCTCGGCGGC
GCTGGTGCAA AACTGGAAGA TATGGCGGCA GCGTATACCG CGTTTGCTCG CCACGGCAAG
GCAGGCAAAT TGCGCTTACA GCCTGACGAT CCGCTGCTTG AACGGCCTTT AATGTCGTCG
GGGGCGGCGT GGATCATTCG CCGGATTATG GCTGATGAAG CGCAACCCTT GCCGGATAGT
GCCTTGCCGC GCGTCGCCCC ACTGGCATGG AAAACGGGCA CCAGCTATGG CTATCGTGAC
GCCTGGGCGA TTGGGGTTAA CGCTCGCTAT GTCATTGGGA TCTGGACTGG CAGACCGGAC
GGCACGCCCG TTGTTGGTCA GTTTGGCTTT GCCAGTGCCG TACCATTGTT GAATCAGGTC
AATAATATCT TACTGTCGCG CAGTGCGAAT CTGCCGGAAG ACCCGCGCCC GAACTCAGTC
ACTCGTGGCG TTATCTGCTG GCCGGGCGGA CAGTCTTTGC CGGAAGGTGA CGGTAACTGT
CGCCGCCGCC TGGCAACCTG GCTGCTGGAC GGGAGTCAGC CGCCAACTCT ATTACTGCCG
GAGCAGGAAG GCATTAATGG CATTCGTTTC CCCATCTGGC TGGATGAAAA TGGCAAACGT
GTTGCCGCTG ATTGCCCGCA AGCGCGACAA GAAATGATAA ATGTCTGGCC GCTACCGCTG
GAACCCTGGC TGCCCGCATC AGAACGTCGC GCTGTGCGCT TACCACCGGC CTCGACAAGT
TGCCCGCCAT ACGGTCACGA TGCCCAGCTC CCGCTGCAGC TGACAGGCGT TCGCGATGGC
GCGATTATTA AACGTTTACC GGGCGCAGCG GAAGCGACTT TGCCGTTGCA ATCAAGTGGA
GGGGCAGGTG AACGCTGGTG GTTTCTGAAT GGCGAACCGT TAACTGAACG CGGGCGCAAC
GTGACCCTGC ATTTGACGGA TAAAGGTGAT TATCAATTGC TGGTGATGGA TGACGTGGGG
CAAATCGCGA CAGTGAAATT TGTCATGCAA TAG
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| Protein sequence | MLRLLTKRGC WITLAAVPFL LFLAAWGADK LWPLPLHEVN PARVVVAQDG TPLWRFADAD
GIWRYPVTIE DVSPRYLEAL INYEDRWFWK HPGVNPFSVA RAAWQDLTSG RVISGGSTLT
MQVARLLDPH PKTFGGKILQ LWRALQLEWH LSKREILILY LNRAPFGGTL QGIGAASWAY
LGKSPANLSY SEAAMLAVLP QAPSRVRPDR WPERAEAARN KVLERMAVQG VWSREQVKES
REEPIWLAPR QMPQLAPLFS RMMLGKSKSD KIVTTLDAGL QRRLEELAQN WKGRLPPRSS
LAMIVVDHTD MRVRGWVGSV DLNDDSRFGH VDMVNAIRSP GSVLKPFVYG LALDEGLIHP
ASLLQDVPRR TGDYRPGNFD SGFHGPISMS EALVRSLNLP AVQVLEAYGP KRFAAKLRNV
GLPLYLPNGA APNLSLILGG AGAKLEDMAA AYTAFARHGK AGKLRLQPDD PLLERPLMSS
GAAWIIRRIM ADEAQPLPDS ALPRVAPLAW KTGTSYGYRD AWAIGVNARY VIGIWTGRPD
GTPVVGQFGF ASAVPLLNQV NNILLSRSAN LPEDPRPNSV TRGVICWPGG QSLPEGDGNC
RRRLATWLLD GSQPPTLLLP EQEGINGIRF PIWLDENGKR VAADCPQARQ EMINVWPLPL
EPWLPASERR AVRLPPASTS CPPYGHDAQL PLQLTGVRDG AIIKRLPGAA EATLPLQSSG
GAGERWWFLN GEPLTERGRN VTLHLTDKGD YQLLVMDDVG QIATVKFVMQ
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