Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E2843 |
Symbol | dapE |
ID | 6273137 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 2640080 |
End bp | 2641207 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641726790 |
Product | succinyl-diaminopimelate desuccinylase |
Protein accession | YP_001881263 |
Protein GI | 187733531 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
Num covering plasmid clones | 46 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGTGCC CGGTTATTGA GCTGACACAA CAGCTTATTC GCCGCCCTTC CCTGAGTCCT GATGACGCAG GATGCCAGGC TTTGTTGATT GAACGTTTGC AGGCGATCGG TTTTACCGTT GAACGCATGG ACTTTGCCGA TACGCAGAAT TTTTGGGCAT GGCGTGGGCA AGGTGAAACG TTAGCCTTTG CCGGGCATAC CGACGTGGTG CCGCCTGGCG ACGCCGATCG TTGGATCAAT CCGCCGTTTG AACCCACCAT TCGTGATGGC ATGTTATTCG GGCGCGGTGC GGCAGATATG AAAGGCTCGC TGGCGGCGAT GGTGGTAGCG GCAGAACGCT TTGTCGCACA ACATCCCAAC CATACGGGGC GACTGGCATT TCTGATCACC TCTGATGAAG AAGCCAGTGC CCACAACGGT ACGGTAAAAG TCGTCGAAGC GTTGATGGCA CGTAATGAGC GTCTCGATTA CTGCCTGGTC GGCGAACCGT CGAGTATCGA AGTGGTTGGT GATGTGGTGA AAAATGGTCG TCGCGGATCG TTAACCTGCA ACCTTACCAT TCATGGCGTT CAGGGGCATG TGGCCTACCC GCATCTGGCT GACAATCCAG TACATCGCGC AGCACCTTTC CTTAATGAAT TAGTGGCTAT TGAGTGGGAT CAGGGCAATG AATTTTTCCC GGCGACCAGT ATGCAGATTG CTAATATTCA GGCGGGAACG GGCAGTAACA ATGTTATTCC GGGTGAACTG TTTGTGCAGT TTAACTTCCG CTTCAGCACC GAACTGACTG ATGAGATGAT CAAAGCGCAG GTGCTTGCCC TGCTTGAAAA ACATCAACTG CGCTATACGG TGGATTGGTG GCTTTCCGGG CAGCCATTTT TGACCGCGCG CGGTAAACTG GTGGATGCGG TCGTTAACGC GGTTGAGCAC TATAATGAAA TTAAACCGCA GCTACTGACC ACAGGCGGAA CGTCCGACGG GCGCTTTATT GCTCGCATGG GGGCGCAGGT GGTGGAACTC GGGCCGGTCA ATGCCACTAT TCATAAAATT AATGAATGTG TGAACACTGC CGACCTGCAG CTACTTGCCC GTATGTATCA ACGTATCATG GAACAGCTCG TCGCCTGA
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Protein sequence | MSCPVIELTQ QLIRRPSLSP DDAGCQALLI ERLQAIGFTV ERMDFADTQN FWAWRGQGET LAFAGHTDVV PPGDADRWIN PPFEPTIRDG MLFGRGAADM KGSLAAMVVA AERFVAQHPN HTGRLAFLIT SDEEASAHNG TVKVVEALMA RNERLDYCLV GEPSSIEVVG DVVKNGRRGS LTCNLTIHGV QGHVAYPHLA DNPVHRAAPF LNELVAIEWD QGNEFFPATS MQIANIQAGT GSNNVIPGEL FVQFNFRFST ELTDEMIKAQ VLALLEKHQL RYTVDWWLSG QPFLTARGKL VDAVVNAVEH YNEIKPQLLT TGGTSDGRFI ARMGAQVVEL GPVNATIHKI NECVNTADLQ LLARMYQRIM EQLVA
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