Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E2442 |
Symbol | cydD |
ID | 6271567 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 2242781 |
End bp | 2244547 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641726434 |
Product | cysteine/glutathione ABC transporter membrane/ATP-binding component |
Protein accession | YP_001880916 |
Protein GI | 187732874 |
COG category | [C] Energy production and conversion [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.000262034 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAAT CTCGTCAAAA AGAGTTAACC CGCTGGTTAA AACAGCAAAG CGTCATCTCC CAACGTTGGC TGAATATTTC TCGTCTGCTG GGCTTTGTGA GTGGCATATT GATCATTGCC CAGGCCTGGT TCATGGCGCG AATTCTGCAA CATATGATTA TGGAGAATAT TCCCCGTGAA GCCCTGCTGC TTCCCTTTAC GTTACTGGTT CTGACCTTTG TACTGCGCGC ATGGGTGGTC TGGTTACGCG AACGGGTGGG TTATCACGCC GGGCAGCATA TCCGCTTTGC CATCCGCCGG CAGGTTCTCG ACCGTCTGCA ACAAGCAGGG CCAGCGTGGA TTCAGGGTAA ACCTGCGGGG AGCTGGGCGA CGCTGGTACT CGAGCAAATT GACGATATGC ATGATTACTA TGCACGCTAC CTGCCGCAAA TGGCGCTGGC AGTGTCGGTG CCGTTGCTGA TTGTGGTGGC AATCTTCCCC TCAAACTGGG CTGCGGCGCT CATTCTGCTG GGCACTGCAC CGTTAATTCC GTTGTTTATG GCGCTGGTTG GAATGGGGGC TGCCGATGCT AACCGACGTA ACTTTCTCGC TCTTGCTCGC TTAAGTGGGC ATTTCCTCGA TCGCCTGCGC GGCATGGAAA CATTGCGTAT TTTTGGTCGT GGTGAAGCTG AAATTGAAAG TATTCGTTCT GCTTCGGAAG ATTTCCGCCA ACGGACAATG GAAGTGCTAC GGCTGGCATT TTTATCCTCC GGCATTCTCG AATTTTTTAC CTCGCTGTCA ATTGCTCTGG TGGCGGTCTA CTTTGGTTTT TCCTATCTCG GCGAGCTGGA TTTTGGTCAC TACGATACTG GCGTGACGCT GGCTGCGGGT TTTCTGGCCC TGATCCTTGC GCCAGAGTTT TTCCAGCCAT TACGCGATCT CGGTACGTTT TATCATGCTA AAGCCCAGGC TGTTGGTGGG GCAAACAGTC TGAAAACATT TATGGAAACC CCGCTCGCCC ATCCGCAGCG TGGCGAGGTG GAATTAGCAT CGACCGATCC GGTGACCATT GAGGCCGAGG ATCTGTTTAT CACGTCGCCG GAAGGTAAAA CGCTGGCCGG ACCGCTGAAC TTTACTTTGC CAGCAGGCCA ACGTGCCGTG TTGGTTGGTC GCAGCGGTTC AGGTAAAAGT TCACTGTTGA ACGCGCTTTC TGGTTTTCTC TCATATCAGG GATCGCTACG AATCAACGGG ATAGAATTAC GCGATTTATC ACCAGAATCA TGGCGTAAAC ATCTCTCCTG GGTTGGGCAA AATCCACAAT TACCGGCAGC AACATTACGG GATAACGTAC TACTGGCGCG ACCTGATGCC AGCGAACATG AATTACAAGC AGCGCTGGAT AACGCCTGGG TCAGCGAGTT TCTACCGCTC CTGCCACAAG GCGTTGATAC GCCTGTTGGC GACCAGGCTG CCCGCCTTTC CGTGGGGCAG GCGCAGCGCG TGGCGGTGGC CCGTGTGTTA CTAAATCCCT GTTCGCTATT ACTGTTGGAT GAACCCGCTG CCAGCCTTGA TGCTCACAGT GAACAGCGCG TAATGGAGGC GCTGAATGCC GCCTCTCTGC GCCAGACAAC GTTAATGGTC ACCCACCAGT TAGAAGATCT TGCTGACTGG GATGTCATTT GGGTTATGCA GGATGGCCGG ATTATTGAGC AAGGACGTTA CGCGGAATTA AGTGTGGCTG GTGGCCCATT CGCCACATTA CTGGCCCATC GTCAGGAGGA GATTTAA
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Protein sequence | MNKSRQKELT RWLKQQSVIS QRWLNISRLL GFVSGILIIA QAWFMARILQ HMIMENIPRE ALLLPFTLLV LTFVLRAWVV WLRERVGYHA GQHIRFAIRR QVLDRLQQAG PAWIQGKPAG SWATLVLEQI DDMHDYYARY LPQMALAVSV PLLIVVAIFP SNWAAALILL GTAPLIPLFM ALVGMGAADA NRRNFLALAR LSGHFLDRLR GMETLRIFGR GEAEIESIRS ASEDFRQRTM EVLRLAFLSS GILEFFTSLS IALVAVYFGF SYLGELDFGH YDTGVTLAAG FLALILAPEF FQPLRDLGTF YHAKAQAVGG ANSLKTFMET PLAHPQRGEV ELASTDPVTI EAEDLFITSP EGKTLAGPLN FTLPAGQRAV LVGRSGSGKS SLLNALSGFL SYQGSLRING IELRDLSPES WRKHLSWVGQ NPQLPAATLR DNVLLARPDA SEHELQAALD NAWVSEFLPL LPQGVDTPVG DQAARLSVGQ AQRVAVARVL LNPCSLLLLD EPAASLDAHS EQRVMEALNA ASLRQTTLMV THQLEDLADW DVIWVMQDGR IIEQGRYAEL SVAGGPFATL LAHRQEEI
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