Gene SbBS512_E2021 details

Gene Information

• Locus tag: SbBS512_E2021
• Symbol: sppA
• ID: 6273053
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 1840081
• End bp: 1841937
• Gene Length: 1857 bp
• Protein Length: 618 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 641726069
• Product: protease 4
• Protein accession: YP_001880563
• Protein GI: 187733275
• COG category: [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0616] Periplasmic serine proteases (ClpP class)
• TIGRFAM ID: [TIGR00705] signal peptide peptidase SppA, 67K type; [TIGR00706] signal peptide peptidase SppA, 36K type

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.0000000124959
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGAACCC TTTGGCGATT TATTGCCGGA TTTTTTAAAT GGACGTGGCG TCTGCTGAAT 
TTCGTCCGTG AAATGGTACT TAACCTGTTC TTTATTTTCC TCGTACTGGT TGGTGTGGGG 
ATCTGGATGC AGGTCAGTGG TGGTGATTCG AAAGAAACGG CCAGTCGTGG CGCACTGCTG 
CTGGACATTT CCGGTGTGAT CGTCGATAAA CCCGACAGTT CTCAGCGGTT TAGTAAATTA 
AGCCGCCAGC TGCTTGGTGC CAGTTCCGAT CGTCTGCAGG AAAACTCACT GTTTGATATC 
GTCAACACCA TTCGCCAGGC GAAGGACGAC CGCAATATCA CCGGTATCGT GATGGATCTG 
AAAAACTTCG CAGGCGGCGA CCAGCCGTCT ATGCAGTACA TCGGCAAAGC CCTGAAAGAG 
TTTCGTGACA GCGGGAAACC GGTTTATGCC GTTGGCGAGA ACTACAGCCA GGGGCAATAT 
TATCTCGCCA GTTTCGCCAA TAAAATTTGG CTGTCACCGC AAGGCGTGGT TGATCTGCAC 
GGTTTTGCTA CCAACGGTCT GTACTACAAA TCGTTGCTGG ATAAGCTGAA AGTTTCCACC 
CATGTGTTCC GCGTGGGTAC GTATAAATCT GCCGTTGAAC CGTTTATTCG TGATGATATG 
TCACCGGCAG CCCGCGAAGC TGACAGCCGC TGGATTGGTG AGCTGTGGCA AAACTATCTG 
AATACTGTTG CCGCTAACCG GCAGATCCCT GCTCAGCAGG TATTCCCTGG CGCGCAAGGG 
TTGCTTGAGG GTTTAACCAA AACCGGTGGC GATACCGCGA AATATGCACT GGAAAACAAG 
CTGGTCGATG CACTGGCATC GAGTGCCGAA ATCGAAAAAG CTCTGACCAA AGAGTTCGGC 
TGGAGTAAGA CTGATAAAAA TTATCGCGCC ATCAGTTATT ACGATTACGC ATTGAAAACG 
CCGGCAGATA CCGGTGACAG CATCGGTGTC GTCTTCGCTA ATGGCGCAAT TATGGATGGC 
GAGGAAACTC AGGGGAATGT TGGCGGTGAT ACCACTGCGG CACAAATCCG CGACGCTCGC 
CTTGACCCGA AAGTGAAAGC GATTGTCCTG CGTGTTAATA GCCCAGGCGG CAGCGTTACC 
GCGTCTGAAG TGATTCGCGC TGAACTGGCA GCAGCCCGGG CAGCGGGTAA GCCTGTGGTT 
GTATCGATGG GCGGCATGGC GGCATCTGGT GGTTACTGGA TTTCCACGCC AGCTAATTAC 
ATTGTGGCTA ACCCCAGCAC CCTGACCGGT TCTATCGGTA TCTTCGGCGT GATCACCACC 
GTAGAAAATA GTCTGGATTC GATTGGTGTT CATACTGATG GTGTCTCAAC TTCACCGCTG 
GCGGATGTTT CTATCACCAG GGCACTGCCG CCGGAAGCGC AGCAGATGAT GCAATTAAGC 
ATTGAGAATG GCTATAAACG CTTTATCACG CTGGTTGCTG ATGCGCGTCA TTCGACGCCG 
GAGCAAATTG ATAAAATCGC CCAGGGCCAC GTCTGGACCG GTCAGGATGC AAAAGCTAAC 
GGGCTGGTCG ATAGTCTCGG GGATTTCGAT GATGCGGTTG CCAAAGCAGC AGAGCTCGCA 
AAAGTGAAAC AGTGGCATCT GGAATACTAC GTTGATGAAC CGACCTTCTT CGACAAAGTG 
ATGGACAACA TGTCTGGTTC TGTCCGGGCA ATGTTGCCAG ATGCGTTCCA GGCCATGTTA 
CCTGCACCGC TTGCCTCGGT AGCCTCTACC GTTAAAAGTG AAAGCGACAA GCTGGCCGCG 
TTTAACGACC CACAAAACCG TTATGCGTTT TGCCTGACCT GCGCCAACGT GCGTTAA 

 

Protein sequence

MRTLWRFIAG FFKWTWRLLN FVREMVLNLF FIFLVLVGVG IWMQVSGGDS KETASRGALL 
LDISGVIVDK PDSSQRFSKL SRQLLGASSD RLQENSLFDI VNTIRQAKDD RNITGIVMDL 
KNFAGGDQPS MQYIGKALKE FRDSGKPVYA VGENYSQGQY YLASFANKIW LSPQGVVDLH 
GFATNGLYYK SLLDKLKVST HVFRVGTYKS AVEPFIRDDM SPAAREADSR WIGELWQNYL 
NTVAANRQIP AQQVFPGAQG LLEGLTKTGG DTAKYALENK LVDALASSAE IEKALTKEFG 
WSKTDKNYRA ISYYDYALKT PADTGDSIGV VFANGAIMDG EETQGNVGGD TTAAQIRDAR 
LDPKVKAIVL RVNSPGGSVT ASEVIRAELA AARAAGKPVV VSMGGMAASG GYWISTPANY 
IVANPSTLTG SIGIFGVITT VENSLDSIGV HTDGVSTSPL ADVSITRALP PEAQQMMQLS 
IENGYKRFIT LVADARHSTP EQIDKIAQGH VWTGQDAKAN GLVDSLGDFD DAVAKAAELA 
KVKQWHLEYY VDEPTFFDKV MDNMSGSVRA MLPDAFQAML PAPLASVAST VKSESDKLAA 
FNDPQNRYAF CLTCANVR