Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1861 |
Symbol | |
ID | 6269578 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 1704626 |
End bp | 1705999 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641725926 |
Product | multidrug efflux protein |
Protein accession | YP_001880424 |
Protein GI | 187732167 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.000216071 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCAGAAGT ATATCAGTGA AGCGCGTCTG TTATTAGCAT TAGCAATCCC GGTGATTCTC GCGCAAATCG CCCAAACTGC GATGGGTTTT GTCGATACCG TGATGGCGGG CGGCTATAGT GCCACCGACA TGGCGGCGGT CGCTATCGGT ACTTCTATCT GGCTTCCGGC GATCCTCTTT GGTCACGGAC TGCTGCTGGC ATTAACGCCG GTTATCGCGC AATTAAATGG TTCCGGTCGA CGTGAGCGCA TTGCGCATCA GGTGCGACAA GGTTTCTGGC TGGCAGGTTT TGTTTCCGTT CTCATTATGC TGGTGCTGTG GAATGCAGGT TACATTATCC GCTCCATGGA AAACATCGAT CCGGCTCTGG CGGACAAAGC CGTGGGTTAT CTGCGTGCGT TGTTGTGGGG CGCGCCGGGC TATCTGTTCT TCCAGGTTGC CCGTAACCAA TGTGAAGGTC TGGCAAAAAC CAAGCCGGGT ATGGTAATGG GCTTTATCGG CCTGCTGGTG AACATTCCGG TGAACTATAT CTTTATTTAT GGTCATTTCG GTATGCCTGA GCTCGGTGGC GTTGGTTGTG GCGTGGCTAC TGCGGCGGTG TATTGGGTCA TGTTCCTTGC CATGGTTTCT TACATTAAAC GCGCCCGCTC CATGCGCGAT ATTCGTAACG AAAAAGGCAC CGCGAAACCC GATCCTGCGG TTATGAAACG ACTGATTCAA CTCGGTTTAC CGATTGCGCT GGCACTATTC TTTGAAGTGA CACTGTTTGC CGTCGTGGCT CTGTTAGTGT CTCCGCTCGG TATTGTTGAT GTCGCAGGAC ACCAGATTGC CCTGAACTTT AGTTCACTGA TGTTTGTGCT TCCAATGTCG CTGGCGGCAG CGGTAACTAT CCGCGTAGGT TATCGTCTGG GTCAGGGCTC AACGCTGGAT GCGCAAACCG CTGCGCGGAC CGGGCTTATG GTGGGTGTCT GTATGGCAAC CCTGACGGCC ATTTTCACGG TTTCACTCCG GGAGCAAATC GCCCTGTTGT ACAACGACAA TCCCGAGGTT GTAACGCTGG CTGCGCATTT GATGTTGCTG GCGGCGGTAT ATCAGATTTC TGACTCAATC CAGGTGATTG GCAGTGGGAT TTTGCGTGGT TATAAAGATA CGCGTTCCAT TTTCTATATC ACCTTTACAG CTTACTGGGT GCTGGGCTTG CCAAGCGGCT ATATTCTGGC ACTGACCGAT CTGGTCGTTG AACCTATGGG GCCAGCAGGC TTCTGGATAG GCTTTATTAT CGGCCTGACA TCGGCAGCCA TTATGATGAT GTTGCGTATG CGGTTCCTGC AACGTCTGCC GTCAGTTATC ATTCTGCAAC GAGCATCCCG CTAA
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Protein sequence | MQKYISEARL LLALAIPVIL AQIAQTAMGF VDTVMAGGYS ATDMAAVAIG TSIWLPAILF GHGLLLALTP VIAQLNGSGR RERIAHQVRQ GFWLAGFVSV LIMLVLWNAG YIIRSMENID PALADKAVGY LRALLWGAPG YLFFQVARNQ CEGLAKTKPG MVMGFIGLLV NIPVNYIFIY GHFGMPELGG VGCGVATAAV YWVMFLAMVS YIKRARSMRD IRNEKGTAKP DPAVMKRLIQ LGLPIALALF FEVTLFAVVA LLVSPLGIVD VAGHQIALNF SSLMFVLPMS LAAAVTIRVG YRLGQGSTLD AQTAARTGLM VGVCMATLTA IFTVSLREQI ALLYNDNPEV VTLAAHLMLL AAVYQISDSI QVIGSGILRG YKDTRSIFYI TFTAYWVLGL PSGYILALTD LVVEPMGPAG FWIGFIIGLT SAAIMMMLRM RFLQRLPSVI ILQRASR
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