Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1798 |
Symbol | fumA |
ID | 6272557 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 1642826 |
End bp | 1644472 |
Gene Length | 1647 bp |
Protein Length | 548 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641725868 |
Product | fumarate hydratase |
Protein accession | YP_001880366 |
Protein GI | 187733657 |
COG category | [C] Energy production and conversion |
COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region [TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.773214 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAAACA AACCCTTTCA TTATCAGGCT CCTTTTCCAC TCAAAAAAGA TGATACTGAG TATTACCTGC TAACCAGCGA ACACGTTAGC GTATCTGAAT TTGAAGGGCA GGAGATTTTG AAAGTCGCAC CCGAAGCGTT AACTCTGTTG GCGCGTCAGG CGTTTCATGA TGCGTCATTT ATGCTGCGTC CGGCTCACCA ACAACAGGTG GCCGACATTC TGCGTGACCC GGAAGCCAGC GAAAATGATA AATATGTGGC GCTGCAATTC CTGCGCAACT CCGACATCGC GGCGAAAGGT GTTCTGCCAA CCTGTCAGGA TACCGGCACT GCGATTATTG TTGGTAAAAA AGGGCAGCGT GTATGGACCG GTGGCTGTGA TGAAGCGGCG CTGGCGCGCG GTGTCTATAA CACTTATATC GAAGATAATT TGCGCTACTC GCAAAACGCG CCGCTGGATA TGTATAAAGA GGTGAATACC GGCACCAATC TGCCAGCGCA GATCGATCTT TATGCCGTTG ATGGCGACGA GTACAAATTC CTCTGTATCG CCAAAGGTGG TGGTTCGGCA AACAAGACGT ATCTCTATCA GGAAACCAAA GCGTTACTAA CGCCGGGGAA ACTGAAAAAT TACCTGGTTG AGAAGATGCG CACGCTGGGT ACGGCGGCCT GTCCTCCGTA TCATATTGCG TTCGTAATTG GTGGAACTTC TGCAGAAACT AACCTTAAAA CAGTGAAACT GGCTTCCGCT AAATACTATG ACGAACTGCC AACGGAAGGG AATGAGCACG GTCAGGCATT CCGCGATGTG GAACTGGAAA AAGAATTGCT GATCGAAGCG CAAAATCTCG GTCTGGGTGC GCAGTTTGGT GGTAAATACT TCGCTCACGA CATACGCGTG ATTCGCCTGC CACGTCACGG CGCATCCTGT CCGGTTGGTA TGGGTGTTTC CTGCTCTGCT GACCGTAATA TCAAAGCGAA GATCAACCGT CAGGGGATCT GGATCGAAAA ACTGGAACAT AATCCAGGTA AATATATCCC TGAAGAGCTG CGTAAAGCGG GAGAAGGCGA AGCGGTGCGC GTTGACCTTA ACCGTCCGAT GAAAGAGATC CTCGCACAGT TGTCGCAGTA TCCCGTTTCT ACACGCTTAT CGCTTAACGG CACGATTATC GTCGGTCGTG ATATTGCTCA CGCCAAACTG AAAGAGCGGA TGGATAACGG TGAAGGGCTG CCGCAGTACA TTAAAGATCA TCCGATTTAC TACGCGGGTC CGGCCAAAAC GCCGGAAGGT TATGCCTCCG GTTCTCTTGG CCCAACGACC GCCGGACGGA TGGATTCTTA TGTCGATCAA CTGCAAGCGC AGGGCGGAAG TATGATCATG CTGGCGAAAG GCAACCGCAG CCAGCAGGTG ACGGATGCCT GTAAAAAACA CGGCGGCTTC TACCTTGGCA GTATCGGTGG TCCGGCCGCT GTATTGGCGC AGGGAAGTAT TAAGAGCCTG GAATGTGTTG AATATCCGGA ACTGGGAATG GAAGCCATCT GGAAAATTGA AGTGGAAGAT TTCCCGGCGT TTATCCTTGT GGATGATAAA GGAAATGACT TCTTCCAGCA GATACAACTC ACACAGTGCA CTCGCTGTGT GAAATAA
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Protein sequence | MSNKPFHYQA PFPLKKDDTE YYLLTSEHVS VSEFEGQEIL KVAPEALTLL ARQAFHDASF MLRPAHQQQV ADILRDPEAS ENDKYVALQF LRNSDIAAKG VLPTCQDTGT AIIVGKKGQR VWTGGCDEAA LARGVYNTYI EDNLRYSQNA PLDMYKEVNT GTNLPAQIDL YAVDGDEYKF LCIAKGGGSA NKTYLYQETK ALLTPGKLKN YLVEKMRTLG TAACPPYHIA FVIGGTSAET NLKTVKLASA KYYDELPTEG NEHGQAFRDV ELEKELLIEA QNLGLGAQFG GKYFAHDIRV IRLPRHGASC PVGMGVSCSA DRNIKAKINR QGIWIEKLEH NPGKYIPEEL RKAGEGEAVR VDLNRPMKEI LAQLSQYPVS TRLSLNGTII VGRDIAHAKL KERMDNGEGL PQYIKDHPIY YAGPAKTPEG YASGSLGPTT AGRMDSYVDQ LQAQGGSMIM LAKGNRSQQV TDACKKHGGF YLGSIGGPAA VLAQGSIKSL ECVEYPELGM EAIWKIEVED FPAFILVDDK GNDFFQQIQL TQCTRCVK
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