Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1538 |
Symbol | gabT1 |
ID | 6269406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 1407002 |
End bp | 1408267 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 641725635 |
Product | 4-aminobutyrate transaminase |
Protein accession | YP_001880141 |
Protein GI | 187734236 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.535334 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAACA ATGAATTCCA TCAGCGTCGT CTTTCTGCTA CCCCACGCGG GGTTGGCGTG ATGTGTAACT TCTTCGCCCA GTCGGCAGAA AACGCTACGC TGAAGGACGT AGAGGGCAAC GAATACATCG ATTTCGCCGC AGGCATTGCG GTGCTGAATA CCGGGCATCG CCACCCTGAT CTGGTCGCGG CGGTGGAGCA GCAATTGCAA CAGTTTACCC ACACGGCGTA TCAGATTGTG CCGTACGAAA GCTACGTCAC GCTGGCGGAG AAAATTAACG CCCTTGCCCC AGTGAGCGGG CAGGCTAAAA CCGCATTCTT CACTACCGGC GCGGAAGCGG TGGAAAACGC GGTGAAAATT GCTCGCGCCC ATACCGGACG ACCTGGCGTG ATTGCGTTTA GCGGCGGCTT CCACGGTCGT ACATATATGA CCATGGCGCT GACCGGAAAA GTTGCGCCGT ACAAAATCGG CTTCGGCCCG TTCCCTGGTT CGGTGTATCA CGTACCTTAT CCGTCAGATT TACACGGCAT TTCAACACAG GACTCCCTCG ACGCCATCGA ATGCTTGTTT AAATCGGACA TTGAAGCGAA GCAGGTGGCG GCCATTATTT TCGAACCGGT GCAGGGCGAG GGCGGTTTCA ACGTTGCGCC AAAAGAGCTG GTTGCCGCCA TTCGCCGCCT GTGCGACGAG CACGGTATTG TGATGATTGC CGATGAAGTG CAAAGCGGCT TTGCGCGTAC CGGTAAACTG TTTGCCATGG ATCATTACGC CGATAAGCCG GACTTAATGA CGATGGCGAA AAGCCTCGCG GGCGGGATGC CGCTTTCGGG CGTGGTCGGT AACGCGAATA TTATGGACGC GCCCGCGCCG GGCGGGTTGG GTGGCACCTA CGCCGGGAAC CCGCTGGCGG TGGCTGCCGC GCACGCGGTG CTCAATATTA TCGACAAAGA ATCACTCTGC GAACGCGCGA ATCAACTGGG CCAGCGTCTC AAAAACACGT TGATTGATGC CAAAGAAAGC GTTCCGGCCA TTGCTGCGGT ACGCGGCCTG GGGTCGATGA TTGCGGCAGA GTTTAACGAT CCGCAAACGG GCGAGCCGTC AGCGGCGATT GCACAGAAAA TCCAGCAACG CGCGCTGGCG CAGGGGCTGC TCCTGCTGAC CTGTGGCGCA TACGGCAACG TGATTCGCTT CCTGTATCCG CTGACCATCC CGGATGCGCA ATTCGATGCG GCAATGAAAA TTTTGCAGGA TGCGCTGAGC GATTAA
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Protein sequence | MSNNEFHQRR LSATPRGVGV MCNFFAQSAE NATLKDVEGN EYIDFAAGIA VLNTGHRHPD LVAAVEQQLQ QFTHTAYQIV PYESYVTLAE KINALAPVSG QAKTAFFTTG AEAVENAVKI ARAHTGRPGV IAFSGGFHGR TYMTMALTGK VAPYKIGFGP FPGSVYHVPY PSDLHGISTQ DSLDAIECLF KSDIEAKQVA AIIFEPVQGE GGFNVAPKEL VAAIRRLCDE HGIVMIADEV QSGFARTGKL FAMDHYADKP DLMTMAKSLA GGMPLSGVVG NANIMDAPAP GGLGGTYAGN PLAVAAAHAV LNIIDKESLC ERANQLGQRL KNTLIDAKES VPAIAAVRGL GSMIAAEFND PQTGEPSAAI AQKIQQRALA QGLLLLTCGA YGNVIRFLYP LTIPDAQFDA AMKILQDALS D
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