Gene SbBS512_E1416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E1416 
SymboloppF 
ID6269793 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp1294717 
End bp1295721 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content52% 
IMG OID641725518 
Productoligopeptide ABC transporter, ATP-binding protein OppF 
Protein accessionYP_001880027 
Protein GI187733252 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.646079 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGCTG TAACCGAAGG AAGAAAAGTC CTCCTTGAAA TCGCCGATCT GAAAGTGCAC 
TTTGAAATCA AAGATGGCAA ACAGTGGTTC TGGCAACCGC CGAAAACGCT CAAAGCCGTC
GATGGTGTCA CGCTTCGCCT GTATGAAGGG GAAACATTAG GTGTGGTAGG GGAATCGGGA
TGCGGTAAGT CCACCTTTGC TCGCGCCATC ATTGGCCTGG TTAAAGCGAC CGACGGTCAT
GTTGCCTGGT TAGGTAAAGA GTTGCTGGGC ATTAAGCCCG ATGAATGGCG TGCCGTTCGC
AGTGATATTC AGATGATTTT CCAGGATCCA TTGGCATCGC TAAACCCGCG CATGACCATC
GGCGAGATCA TCGCTGAACC ACTGCGTACT TATCATCCGA AAATGTCACG TCAGGAAGTT
CGCGAGCGCG TGAAGGCGAT GATGCTGAAA GTCGGGTTAT TGCCTAACCT GATTAACCGC
TATCCGCATG AGTTCTCCGG TGGGCAGTGC CAGCGTATCG GGATTGCTCG TGCTCTTATT
CTTGAACCGA AGCTGATTAT CTGTGATGAG CCGGTGTCGG CGCTGGACGT GTCAATTCAG
GCGCAGGTGG TCAACCTGCT CCAGCAGCTG CAACGTGAGA TGGGATTGTC ATTAATTTTT
ATTGCTCATG ACCTGGCCGT GGTAAAACAC ATTTCCGATC GTGTGTTGGT GATGTATCTC
GGCCATGCGG TAGAACTGGG GACCTATGAT GAGGTCTACC ACAATCCACT ACATCCTTAC
ACCAGGGCAT TGATGTCGGC AGTCCCCATA CCTGATCCGG ATCTGGAGAA GAACAAAACC
ATCCAGTTAC TGGAAGGGGA ATTACCGTCG CCGATCAACC CGCCTTCCGG TTGTGTTTTC
CGTACCCGTT GCCCGATTGC CGGTCCGGAG TGCGCCAAAA CACGTCCTGT GCTGGAAGGG
AGTTTCAGAC ACGCCGTTTC TTGCCTGAAA GTCGATCCGC TTTAA
 
Protein sequence
MNAVTEGRKV LLEIADLKVH FEIKDGKQWF WQPPKTLKAV DGVTLRLYEG ETLGVVGESG 
CGKSTFARAI IGLVKATDGH VAWLGKELLG IKPDEWRAVR SDIQMIFQDP LASLNPRMTI
GEIIAEPLRT YHPKMSRQEV RERVKAMMLK VGLLPNLINR YPHEFSGGQC QRIGIARALI
LEPKLIICDE PVSALDVSIQ AQVVNLLQQL QREMGLSLIF IAHDLAVVKH ISDRVLVMYL
GHAVELGTYD EVYHNPLHPY TRALMSAVPI PDPDLEKNKT IQLLEGELPS PINPPSGCVF
RTRCPIAGPE CAKTRPVLEG SFRHAVSCLK VDPL