Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E1416 |
Symbol | oppF |
ID | 6269793 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 1294717 |
End bp | 1295721 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641725518 |
Product | oligopeptide ABC transporter, ATP-binding protein OppF |
Protein accession | YP_001880027 |
Protein GI | 187733252 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.646079 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGCTG TAACCGAAGG AAGAAAAGTC CTCCTTGAAA TCGCCGATCT GAAAGTGCAC TTTGAAATCA AAGATGGCAA ACAGTGGTTC TGGCAACCGC CGAAAACGCT CAAAGCCGTC GATGGTGTCA CGCTTCGCCT GTATGAAGGG GAAACATTAG GTGTGGTAGG GGAATCGGGA TGCGGTAAGT CCACCTTTGC TCGCGCCATC ATTGGCCTGG TTAAAGCGAC CGACGGTCAT GTTGCCTGGT TAGGTAAAGA GTTGCTGGGC ATTAAGCCCG ATGAATGGCG TGCCGTTCGC AGTGATATTC AGATGATTTT CCAGGATCCA TTGGCATCGC TAAACCCGCG CATGACCATC GGCGAGATCA TCGCTGAACC ACTGCGTACT TATCATCCGA AAATGTCACG TCAGGAAGTT CGCGAGCGCG TGAAGGCGAT GATGCTGAAA GTCGGGTTAT TGCCTAACCT GATTAACCGC TATCCGCATG AGTTCTCCGG TGGGCAGTGC CAGCGTATCG GGATTGCTCG TGCTCTTATT CTTGAACCGA AGCTGATTAT CTGTGATGAG CCGGTGTCGG CGCTGGACGT GTCAATTCAG GCGCAGGTGG TCAACCTGCT CCAGCAGCTG CAACGTGAGA TGGGATTGTC ATTAATTTTT ATTGCTCATG ACCTGGCCGT GGTAAAACAC ATTTCCGATC GTGTGTTGGT GATGTATCTC GGCCATGCGG TAGAACTGGG GACCTATGAT GAGGTCTACC ACAATCCACT ACATCCTTAC ACCAGGGCAT TGATGTCGGC AGTCCCCATA CCTGATCCGG ATCTGGAGAA GAACAAAACC ATCCAGTTAC TGGAAGGGGA ATTACCGTCG CCGATCAACC CGCCTTCCGG TTGTGTTTTC CGTACCCGTT GCCCGATTGC CGGTCCGGAG TGCGCCAAAA CACGTCCTGT GCTGGAAGGG AGTTTCAGAC ACGCCGTTTC TTGCCTGAAA GTCGATCCGC TTTAA
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Protein sequence | MNAVTEGRKV LLEIADLKVH FEIKDGKQWF WQPPKTLKAV DGVTLRLYEG ETLGVVGESG CGKSTFARAI IGLVKATDGH VAWLGKELLG IKPDEWRAVR SDIQMIFQDP LASLNPRMTI GEIIAEPLRT YHPKMSRQEV RERVKAMMLK VGLLPNLINR YPHEFSGGQC QRIGIARALI LEPKLIICDE PVSALDVSIQ AQVVNLLQQL QREMGLSLIF IAHDLAVVKH ISDRVLVMYL GHAVELGTYD EVYHNPLHPY TRALMSAVPI PDPDLEKNKT IQLLEGELPS PINPPSGCVF RTRCPIAGPE CAKTRPVLEG SFRHAVSCLK VDPL
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