| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0735 |
|---|
| Symbol | napA |
|---|
| ID | 6272060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 693403 |
|---|
| End bp | 695889 |
|---|
| Gene Length | 2487 bp |
|---|
| Protein Length | 828 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641724921 |
|---|
| Product | nitrate reductase catalytic subunit |
|---|
| Protein accession | YP_001879449 |
|---|
| Protein GI | 187732303 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01706] periplasmic nitrate reductase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCA GTCGTCGTAG CTTTATGAAA GCTAACGCCG TTGCGGCCGC TGCGGCGGCT
GCCGGTCTCA GCGTGCCGGG CGTTGCCCGC GCCGTTGTTG GTCAGCAGGA AGCCATCAAA
TGGGATAAAG CGCCGTGCCG TTTCTGCGGT ACTGGTTGCG GCGTTCTGGT CGGAACGCAG
CAGGGACGTG TGGTGGCCTG TCAGGGCGAC CCAGACGCAC CGGTTAACCG TGGCCTGAAC
TGCATTAAGG GCTATTTCCT GCCCAAGATC ATGTACGGTA AAGACCGTTT GACGCAGCCG
CTGCTGCGTA TGAAAAACGG TAAATATGAC AAAGAAGGCG AATTTACCCT AATCACCTGG
GATCAGGCCT TCGATGTGAT GGAAGAGAAA TTCAAAACCG CCCTGAAAGA AAAAGGGCCG
GAATCGATCG GTATGTTCGG TTCTGGTCAG TGGACTATCT GGGAAGGTTA TGCCGCGTCC
AAGCTGTTTA AAGCGGGCTT CCGTTCGAAC AACATCGACC CGAACGCGCG TCACTGTATG
GCGTCGGCAG TAGTTGGCTT TATGCGTACC TTTGGTATGG ATGAGCCGAT GGGCTGCTAT
GACGACATCG AGCAGGCTGA CGCGTTTGTG CTGTGGGGCG CAAACATGGC GGAGATGCAC
CCGATCCTCT GGTCGCGCAT CACTAACCGT CGTCTCTCTA ATCAGAACGT CACCGTGGCG
GTGCTTTCTA CCTACCAGCA TCGTAGCTTC GAGCTGGCGG ATAACGGCAT CATCTTTACG
CCACAGTCTG ACCTGGTGAT CCTGAACTAC ATCGCCAACT ATATCATTCA AAACAATGCG
ATAAATCAGG ACTTCTTCAG CAAACACGTT AACCTGCGCA AAGGGGCGAC GGACATTGGC
TACGGTTTAC GTCCGACCCA TCCGCTGGAA AAAGCAGCGA AGAATCCAGG TTCTGACGCC
TCCGAACCGA TGAGCTTTGA AGATTACAAA GCCTTCGTTG CCGAGTATAC GCTGGAAAAA
ACTGCCGAAA TGACCGGCGT GCCGAAAGAC CAGTTAGAAC AACTGGCGCA GCTGTATGCC
GATCCGAACA AGAAAGTCAT CTCCTACTGG ACGATGGGCT TCAACCAGCA TACTCGTGGC
GTGTGGGCTA ACAACCTGGT CTACAACCTG CACCTGCTGA CCGGCAAAAT TTCCCAGCCG
GGTTGCGGTC CGTTCTCCCT GACCGGGCAA CCTTCTGCGT GTGGTACTGC GCGTGAAGTG
GGCACCTTTG CTCACCGTCT GCCTGCGGAC ATGGTGGTGA CCAACGAGAA ACACCGTGAT
ATCTGCGAGA AGAAGTGGAA TATCCCGAGC GGCACCATTC CGGCGAAAAT CGGTCTGCAC
GCGGTGGCAC AAGACCGTGC GCTGAAAGAC GGCAAACTGA ATGTTTACTG GACCATGTGT
ACCAACAACA TGCAGGCCGG GCCGAACATC AATGAAGAGC GTATGCCGGG CTGGCGCGAT
CCGCGCAACT TCATCATCGT CTCCGATCCG TATCCGACAG TCAGTGCGCT GGCCGCCGAC
TTGATCCTGC CGACCGCAAT GTGGGTAGAG AAAGAGGGCG CTTACGGTAA CGCCGAACGC
CGTACTCAGT TCTGGCGTCA ACAGGTACAG GCACCGGGCG AAGCGAAATC GGATCTCTGG
CAGTTAGTCC AGTTCTCCCG CCGCTTCAAA ACTGAAGAAG TATGGCCGGA AGATCTGCTG
GCGAAGAAAC CGGAACTGCG TGGCAAAACG CTGTACGAAG TGCTGTATGC CACACCGGAA
GTGAGCAAAT TCCCGGTATC CGAACTGGCG GAAGATCAGC TGAACGATGA ATCCCGCGAG
CTGGGCTTCT ATCTGCAAAA AGGGCTGTTC GAAGAGTACG CATGGTTTGG TCGCGGTCAC
GGTCACGATC TGGCACCGTT CGATGACTAC CACAAAGCGC GCGGTCTGCG CTGGCCGGTG
GTGAACGGTA AAGAAACGCA GTGGCGTTAC AGCGAAGGTA ACGACCCGTA CGTGAAAGCG
GGCGAAGGCT ATAAGTTCTA CGGCAAACCG GATGGCAAAG CGGTGATCTT CGCACTGCCA
TTCGAACCGG CGGCGGAAGC ACCGGATGAA GAGTACGACC TGTGGCTCTC TACCGGACGC
GTTCTGGAGC ACTGGCACAC CGGCAGTATG ACTCGCCGTG TACCAGAACT GCACCGCGCC
TTCCCGGAAG CGGTCCTGTT TATTCACCCG CTGGATGCGA AAGCGCGCGA TCTGCGTCGT
GGCGACAAAG TGAAAGTGGT TTCTCGCCGT GGCGAAGTGA TCTCGATTGT CGAAACGCGC
GGTCGTAACC GTCCGCCGCA GGGCCTGGTG TACATGCCGT TCTTCGACGC CGCACAGCTG
GTTAACAAAC TAACGCTGGA CGCGACCGAT CCGCTCTCGA AAGAGACGGA CTTCAAGAAG
TGCGCAGTCA AACTGGAGAA GGTGTAA
|
|---|
| Protein sequence | MKLSRRSFMK ANAVAAAAAA AGLSVPGVAR AVVGQQEAIK WDKAPCRFCG TGCGVLVGTQ
QGRVVACQGD PDAPVNRGLN CIKGYFLPKI MYGKDRLTQP LLRMKNGKYD KEGEFTLITW
DQAFDVMEEK FKTALKEKGP ESIGMFGSGQ WTIWEGYAAS KLFKAGFRSN NIDPNARHCM
ASAVVGFMRT FGMDEPMGCY DDIEQADAFV LWGANMAEMH PILWSRITNR RLSNQNVTVA
VLSTYQHRSF ELADNGIIFT PQSDLVILNY IANYIIQNNA INQDFFSKHV NLRKGATDIG
YGLRPTHPLE KAAKNPGSDA SEPMSFEDYK AFVAEYTLEK TAEMTGVPKD QLEQLAQLYA
DPNKKVISYW TMGFNQHTRG VWANNLVYNL HLLTGKISQP GCGPFSLTGQ PSACGTAREV
GTFAHRLPAD MVVTNEKHRD ICEKKWNIPS GTIPAKIGLH AVAQDRALKD GKLNVYWTMC
TNNMQAGPNI NEERMPGWRD PRNFIIVSDP YPTVSALAAD LILPTAMWVE KEGAYGNAER
RTQFWRQQVQ APGEAKSDLW QLVQFSRRFK TEEVWPEDLL AKKPELRGKT LYEVLYATPE
VSKFPVSELA EDQLNDESRE LGFYLQKGLF EEYAWFGRGH GHDLAPFDDY HKARGLRWPV
VNGKETQWRY SEGNDPYVKA GEGYKFYGKP DGKAVIFALP FEPAAEAPDE EYDLWLSTGR
VLEHWHTGSM TRRVPELHRA FPEAVLFIHP LDAKARDLRR GDKVKVVSRR GEVISIVETR
GRNRPPQGLV YMPFFDAAQL VNKLTLDATD PLSKETDFKK CAVKLEKV
|
|---|
| |