Gene SbBS512_E0554 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E0554 
SymbolkdpD 
ID6269024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp531956 
End bp534640 
Gene Length2685 bp 
Protein Length894 aa 
Translation table11 
GC content58% 
IMG OID641724759 
Productsensor protein KdpD 
Protein accessionYP_001879306 
Protein GI187732356 
COG category[T] Signal transduction mechanisms 
COG ID[COG2205] Osmosensitive K+ channel histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAACG AACCCTTACG TCCCGACCCC GATCGTCTGC TGGAACAAAC TGCCGCGCCG 
CATCGGGGGA AGCTGAAAGT TTTCTTCGGT GCCTGTGCAG GCGTCGGGAA GACCTGGGCG
ATGCTGGCAG AAGCCCAGCG ACTGCGGGCG CAAGGGCTGG ATATTGTGGT TGGCGTGGTA
GAAACCCACG GGCGAAAAGA TACCGCCGCA ATGCTGGAAG GGCTGGCTGT TCTGCCGCCA
AAACGCCTGG CGTACCGTGG GCGGCACATC TGCGAGTTTG ACCTCGATGC CGCCCTCGCC
CGCCGTCCGG CGCTGATCTT AATGGACGAA CTGGCGCACA GTAATGCGCT AGGTTCTCGT
CACCCTAAAC GCTGGCAGGA CATCGAAGAG CTGCAGGAAG CAGGCATTGA TGTTTTCACT
ACCGTCAACG TTCAGCATCT GGAAAGTCTG AATGATGTGG TCAGCGGCGT CACCGGAATT
CAGGTACGGG AAACCGTGCC CGATCCTTTT TTCGATGCCG CCGACGACGT GGTTCTGGTG
GACTTGCCCC CGGACGATCT GCGCCAGCGG CTGAAAGAAG GCAAAGCCTA TATTGCCGGG
CAGGCGGAGC GCGCCATTGA ACATTTTTTC CGCAAAGGCA ATCTGATCGC CCTGCGCGAA
CTGGCACTGC GCCGTACTGC CGATCGCGTT GATGAGCAAA TGCGCGCCTG GCGGGGGCAT
CCTGGCGAAG AGAAAGTCTG GCACACGCGC GACGCGATCC TTTTATGCAT CGGCCATAAC
ACCGGTAGTG AGAAGCTGGT CCGCGCGGCG GCGCGGCTGG CGTCACGGCT GGGTAGAGTC
TGGCACGCGG TGTATGTTGA AACCCCTGCC CTGCACCGCT TACCGGAAAA AAAACGTCGG
GCAATTCTCA GCGCCTTACG TCTGGCGCAG GAGCTGGGCG CGGAGACGGC AACACTTTCT
GATCCAGCGG AAGAAAAAGC AGTAGTGCGT TATGCCCGTG AACATAATCT CGGCAAGATT
ATTCTCGGTC GCCCGGCCTC GCGCCGCTGG TGGCGTCGGG AAACGTTTGC TGACCGACTG
GCGCGCATCG CCCCCGATCT CGATCAGGTG CTGGTCGCGC TTGATGAACC ACCCGCCCGC
ACGATTAACA ACGCGCCGGA TAGCCGCTCT TTTAAAGACA AGTGGCGGGT ACAGATTCAG
GGATGCGTGG TTGCCGCCGC GTTATGCGCC GTTATCACTT TAATTGCCAT GCAGTGGCTG
ATGGCGTTTG ATGCCGCCAA CCTGGTGATG CTGTATCTGC TTGGCGTGGT GGTGGTGGCG
CTATTTTATG GACGCTGGCC TTCGGTGGTT GCTACCGTCA TTAATGTGGT GAGTTTCGAT
CTCTTTTTTA TCGCCCCACG CGGCACGCTC GCCGTCTCTG ATGTGCAATA TCTGCTGACC
TTCGCAGTGA TGTTAACCGT CGGGCTGGTG ATCGGGAACC TTACTGCTGG CGTGCGTTAT
CAGGCGCGGG TAGCCCGTTA CCGCGAGCAA CGCACACGGC ACTTATATGA AATGTCGAAA
GCTCTGGCGG TGGGCCGCAG TCCGCAGGAC ATCGCCGCCA CCATCGAACA ATTTATTGCC
TCCACGTTTC ATGCCCGCAG TCAGGTGTTG TTGCCCGATG ACAACGGTAA ATTGCAGCCG
TTAACACATC CGCAAGGAAT GACGCCATGG GACGATACCA TCGCGCAGTG GAGTTTTGAT
AAAGGCCTGC CTGCGGGCGC GGGCACCGAC ACGTTACCCG GTGTACCGTA CCAGATTTTG
CCGCTAAAAA GCGGCGAGAA AACCTACGGG CTGGTGGTGG TGGAGCCGGG GAATCTGCGC
CAGTTGATGA TCCCGGAACA GCAGCGCCTG CTGGAGACGT TTACGCTGTT AGTCGCCAAT
GCCCTTGAGC GGCTGACGCT AACCGCCAGC GAAGAACAGG CGCGGATGGC AAGCGAACGT
GAACAGATCC GCAACGCCCT GCTGGCAGCG CTTTCGCATG ATTTACGCAC GCCGCTCACG
GTGCTGTTCG GTCAGGCAGA AATCTTAACG CTCGATCTGG CAAGCGAAGG ATCGCCCCAC
GCCCGCCAGG CCAGCGAGAT TCGTCAGCAT GTGCTGAACA CTACCCGACT GGTGAATAAT
CTACTGGATA TGGCGCGAAT TCAGTCCGGC GGCTTTAATT TGAAGAAAGA GTGGTTAACG
CTGGAAGAAG TGGTCGGTAG CGCGCTGCAA ATGCTGGAAC CGGGTTTATC GTCGCCCATC
AATCTTTCTC TGCCAGAACC GCTGACCTTA ATCCACGTTG ACGGGCCACT CTTTGAACGG
GTGCTGATTA ATCTGCTGGA GAACGCGGTG AAATATGCGG GTGCGCAGGC CGAAATTGGT
ATCGATGCCC ACGTTGAGGG CGAAAATCTA CAACTGGATG TCTGGGATAA CGGCCCCGGT
CTTCCGCCAG GCCAGGAGCA GACGATATTT GATAAGTTTG CTCGCGGGAA TAAAGAGTCG
GCAGTACCGG GGGTAGGGCT TGGACTGGCA ATTTGTCGGG CGATAGTGGA TGTACACGGG
GGCACTATTA CCGCGTTCAA CCGACCGGAA GGTGGTGCCT GTTTTCGTGT TACACTTCCC
CAGCAAACTG CCCCTGAACT TGAAGAATTT CATGAGGATA TGTGA
 
Protein sequence
MNNEPLRPDP DRLLEQTAAP HRGKLKVFFG ACAGVGKTWA MLAEAQRLRA QGLDIVVGVV 
ETHGRKDTAA MLEGLAVLPP KRLAYRGRHI CEFDLDAALA RRPALILMDE LAHSNALGSR
HPKRWQDIEE LQEAGIDVFT TVNVQHLESL NDVVSGVTGI QVRETVPDPF FDAADDVVLV
DLPPDDLRQR LKEGKAYIAG QAERAIEHFF RKGNLIALRE LALRRTADRV DEQMRAWRGH
PGEEKVWHTR DAILLCIGHN TGSEKLVRAA ARLASRLGRV WHAVYVETPA LHRLPEKKRR
AILSALRLAQ ELGAETATLS DPAEEKAVVR YAREHNLGKI ILGRPASRRW WRRETFADRL
ARIAPDLDQV LVALDEPPAR TINNAPDSRS FKDKWRVQIQ GCVVAAALCA VITLIAMQWL
MAFDAANLVM LYLLGVVVVA LFYGRWPSVV ATVINVVSFD LFFIAPRGTL AVSDVQYLLT
FAVMLTVGLV IGNLTAGVRY QARVARYREQ RTRHLYEMSK ALAVGRSPQD IAATIEQFIA
STFHARSQVL LPDDNGKLQP LTHPQGMTPW DDTIAQWSFD KGLPAGAGTD TLPGVPYQIL
PLKSGEKTYG LVVVEPGNLR QLMIPEQQRL LETFTLLVAN ALERLTLTAS EEQARMASER
EQIRNALLAA LSHDLRTPLT VLFGQAEILT LDLASEGSPH ARQASEIRQH VLNTTRLVNN
LLDMARIQSG GFNLKKEWLT LEEVVGSALQ MLEPGLSSPI NLSLPEPLTL IHVDGPLFER
VLINLLENAV KYAGAQAEIG IDAHVEGENL QLDVWDNGPG LPPGQEQTIF DKFARGNKES
AVPGVGLGLA ICRAIVDVHG GTITAFNRPE GGACFRVTLP QQTAPELEEF HEDM