Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E0554 |
Symbol | kdpD |
ID | 6269024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 531956 |
End bp | 534640 |
Gene Length | 2685 bp |
Protein Length | 894 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641724759 |
Product | sensor protein KdpD |
Protein accession | YP_001879306 |
Protein GI | 187732356 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAACG AACCCTTACG TCCCGACCCC GATCGTCTGC TGGAACAAAC TGCCGCGCCG CATCGGGGGA AGCTGAAAGT TTTCTTCGGT GCCTGTGCAG GCGTCGGGAA GACCTGGGCG ATGCTGGCAG AAGCCCAGCG ACTGCGGGCG CAAGGGCTGG ATATTGTGGT TGGCGTGGTA GAAACCCACG GGCGAAAAGA TACCGCCGCA ATGCTGGAAG GGCTGGCTGT TCTGCCGCCA AAACGCCTGG CGTACCGTGG GCGGCACATC TGCGAGTTTG ACCTCGATGC CGCCCTCGCC CGCCGTCCGG CGCTGATCTT AATGGACGAA CTGGCGCACA GTAATGCGCT AGGTTCTCGT CACCCTAAAC GCTGGCAGGA CATCGAAGAG CTGCAGGAAG CAGGCATTGA TGTTTTCACT ACCGTCAACG TTCAGCATCT GGAAAGTCTG AATGATGTGG TCAGCGGCGT CACCGGAATT CAGGTACGGG AAACCGTGCC CGATCCTTTT TTCGATGCCG CCGACGACGT GGTTCTGGTG GACTTGCCCC CGGACGATCT GCGCCAGCGG CTGAAAGAAG GCAAAGCCTA TATTGCCGGG CAGGCGGAGC GCGCCATTGA ACATTTTTTC CGCAAAGGCA ATCTGATCGC CCTGCGCGAA CTGGCACTGC GCCGTACTGC CGATCGCGTT GATGAGCAAA TGCGCGCCTG GCGGGGGCAT CCTGGCGAAG AGAAAGTCTG GCACACGCGC GACGCGATCC TTTTATGCAT CGGCCATAAC ACCGGTAGTG AGAAGCTGGT CCGCGCGGCG GCGCGGCTGG CGTCACGGCT GGGTAGAGTC TGGCACGCGG TGTATGTTGA AACCCCTGCC CTGCACCGCT TACCGGAAAA AAAACGTCGG GCAATTCTCA GCGCCTTACG TCTGGCGCAG GAGCTGGGCG CGGAGACGGC AACACTTTCT GATCCAGCGG AAGAAAAAGC AGTAGTGCGT TATGCCCGTG AACATAATCT CGGCAAGATT ATTCTCGGTC GCCCGGCCTC GCGCCGCTGG TGGCGTCGGG AAACGTTTGC TGACCGACTG GCGCGCATCG CCCCCGATCT CGATCAGGTG CTGGTCGCGC TTGATGAACC ACCCGCCCGC ACGATTAACA ACGCGCCGGA TAGCCGCTCT TTTAAAGACA AGTGGCGGGT ACAGATTCAG GGATGCGTGG TTGCCGCCGC GTTATGCGCC GTTATCACTT TAATTGCCAT GCAGTGGCTG ATGGCGTTTG ATGCCGCCAA CCTGGTGATG CTGTATCTGC TTGGCGTGGT GGTGGTGGCG CTATTTTATG GACGCTGGCC TTCGGTGGTT GCTACCGTCA TTAATGTGGT GAGTTTCGAT CTCTTTTTTA TCGCCCCACG CGGCACGCTC GCCGTCTCTG ATGTGCAATA TCTGCTGACC TTCGCAGTGA TGTTAACCGT CGGGCTGGTG ATCGGGAACC TTACTGCTGG CGTGCGTTAT CAGGCGCGGG TAGCCCGTTA CCGCGAGCAA CGCACACGGC ACTTATATGA AATGTCGAAA GCTCTGGCGG TGGGCCGCAG TCCGCAGGAC ATCGCCGCCA CCATCGAACA ATTTATTGCC TCCACGTTTC ATGCCCGCAG TCAGGTGTTG TTGCCCGATG ACAACGGTAA ATTGCAGCCG TTAACACATC CGCAAGGAAT GACGCCATGG GACGATACCA TCGCGCAGTG GAGTTTTGAT AAAGGCCTGC CTGCGGGCGC GGGCACCGAC ACGTTACCCG GTGTACCGTA CCAGATTTTG CCGCTAAAAA GCGGCGAGAA AACCTACGGG CTGGTGGTGG TGGAGCCGGG GAATCTGCGC CAGTTGATGA TCCCGGAACA GCAGCGCCTG CTGGAGACGT TTACGCTGTT AGTCGCCAAT GCCCTTGAGC GGCTGACGCT AACCGCCAGC GAAGAACAGG CGCGGATGGC AAGCGAACGT GAACAGATCC GCAACGCCCT GCTGGCAGCG CTTTCGCATG ATTTACGCAC GCCGCTCACG GTGCTGTTCG GTCAGGCAGA AATCTTAACG CTCGATCTGG CAAGCGAAGG ATCGCCCCAC GCCCGCCAGG CCAGCGAGAT TCGTCAGCAT GTGCTGAACA CTACCCGACT GGTGAATAAT CTACTGGATA TGGCGCGAAT TCAGTCCGGC GGCTTTAATT TGAAGAAAGA GTGGTTAACG CTGGAAGAAG TGGTCGGTAG CGCGCTGCAA ATGCTGGAAC CGGGTTTATC GTCGCCCATC AATCTTTCTC TGCCAGAACC GCTGACCTTA ATCCACGTTG ACGGGCCACT CTTTGAACGG GTGCTGATTA ATCTGCTGGA GAACGCGGTG AAATATGCGG GTGCGCAGGC CGAAATTGGT ATCGATGCCC ACGTTGAGGG CGAAAATCTA CAACTGGATG TCTGGGATAA CGGCCCCGGT CTTCCGCCAG GCCAGGAGCA GACGATATTT GATAAGTTTG CTCGCGGGAA TAAAGAGTCG GCAGTACCGG GGGTAGGGCT TGGACTGGCA ATTTGTCGGG CGATAGTGGA TGTACACGGG GGCACTATTA CCGCGTTCAA CCGACCGGAA GGTGGTGCCT GTTTTCGTGT TACACTTCCC CAGCAAACTG CCCCTGAACT TGAAGAATTT CATGAGGATA TGTGA
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Protein sequence | MNNEPLRPDP DRLLEQTAAP HRGKLKVFFG ACAGVGKTWA MLAEAQRLRA QGLDIVVGVV ETHGRKDTAA MLEGLAVLPP KRLAYRGRHI CEFDLDAALA RRPALILMDE LAHSNALGSR HPKRWQDIEE LQEAGIDVFT TVNVQHLESL NDVVSGVTGI QVRETVPDPF FDAADDVVLV DLPPDDLRQR LKEGKAYIAG QAERAIEHFF RKGNLIALRE LALRRTADRV DEQMRAWRGH PGEEKVWHTR DAILLCIGHN TGSEKLVRAA ARLASRLGRV WHAVYVETPA LHRLPEKKRR AILSALRLAQ ELGAETATLS DPAEEKAVVR YAREHNLGKI ILGRPASRRW WRRETFADRL ARIAPDLDQV LVALDEPPAR TINNAPDSRS FKDKWRVQIQ GCVVAAALCA VITLIAMQWL MAFDAANLVM LYLLGVVVVA LFYGRWPSVV ATVINVVSFD LFFIAPRGTL AVSDVQYLLT FAVMLTVGLV IGNLTAGVRY QARVARYREQ RTRHLYEMSK ALAVGRSPQD IAATIEQFIA STFHARSQVL LPDDNGKLQP LTHPQGMTPW DDTIAQWSFD KGLPAGAGTD TLPGVPYQIL PLKSGEKTYG LVVVEPGNLR QLMIPEQQRL LETFTLLVAN ALERLTLTAS EEQARMASER EQIRNALLAA LSHDLRTPLT VLFGQAEILT LDLASEGSPH ARQASEIRQH VLNTTRLVNN LLDMARIQSG GFNLKKEWLT LEEVVGSALQ MLEPGLSSPI NLSLPEPLTL IHVDGPLFER VLINLLENAV KYAGAQAEIG IDAHVEGENL QLDVWDNGPG LPPGQEQTIF DKFARGNKES AVPGVGLGLA ICRAIVDVHG GTITAFNRPE GGACFRVTLP QQTAPELEEF HEDM
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