Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E0327 |
Symbol | secD |
ID | 6269100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 321045 |
End bp | 322892 |
Gene Length | 1848 bp |
Protein Length | 615 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641724565 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001879115 |
Protein GI | 187731876 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.328268 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTAAACC GTTATCCTTT GTGGAAGTAC GTCATGCTGA TCGTGGTGAT TGTCATCGGT CTGCTGTATG CGCTTCCCAA CCTGTTTGGT GAGGATCCGG CTGTTCAGAT CACTGGTGCG CGCGGAGTCG CCGCCAGTGA GCAAACGCTG ATCCAGGTCC AGAAAACGTT ACAAGAAGAA AAAATAACTG CTAAGTCTGT GGCACTGGAA GAGGGCGCTA TTCTTGCGCG CTTCGACTCC ACTGACACCC AGCTGCGCGC TCGTGAAGCA TTAATGGGCG TTATGGGTGA CAAATACGTC GTGGCGCTTA ACCTTGCCCC GGCAACGCCG CGCTGGCTGG CAGCTATTCA CGCTGAGCCG ATGAAGCTCG GCCTTGACCT GCGTGGCGGC GTTCACTTCC TGATGGAAGT GGATATGGAC ACCGCGCTTG GCAAACTCCA GGAACAAAAT ATCGATAGCC TGCGCAGCGA TCTGCGTGAA AAGGGCATCC CGTATACCAC CGTTCGTAAA GAAAACAACT ACGGCCTGAG CATTACTTTC CGCGATGCTA AAGCTCGTGA TGAAGCCATT GCGTATCTGA GCAAGCGCCA TCCGGACTTG GTGATTAGTA GCCAGGGCAG CAACCAGCTG CGTGCGGTAA TGAGCGATGC TCGTCTGAGT GAAGCGCGTG AATATGCGGT GCAGCAGAAC ATCAATATCC TGCGTAACCG TGTAAACCAA CTTGGCGTAG CGGAGCCGGT GGTTCAGCGT CAGGGTGCTG ACCGTATCGT TGTTGAACTG CCAGGTATTC AGGACACTGC GCGTGCGAAA GAGATTCTGG GTGCGACGGC AACGCTGGAA TTCCGTCTGG TAAACACCAA CGTTGACCAG GCCGCTGCGG CATCCGGTCG CGTACCGGGC GACTCTGAAG TGAAACAGAC CCGCGAAGGT CAGCCAGTTG TGCTGTACAA ACGCGTAATT CTGACCGGTG ACCATATCAC CGACTCCACT TCCAGCCAGG ACGAATACAA CCAACCGCAG GTTAACATCT CGCTCGATAG CGCTGGTGGT AACATCATGT CTAACTTCAC TAAGGACAAC ATCGGCAAAC CGATGGCAAC CCTGTTTGTG GAGTACAAAG ACAGCGGTAA GAAAGATGCA AATGGTCGTG CGGTTCTGGT GAAACAGGAA GAGGTGATTA ACATCGCCAA CATCCAGTCT CGTCTGGGTA ACAGCTTCCG TATCACCGGC ATCAACAACC CGAACGAAGC CCGTCAGCTG TCACTGCTGC TGCGTGCCGG TGCGTTGATC GCGCCGATTC AGATTGTTGA AGAACGTACC ATTGGCCCAA CCCTGGGTAT GCAGAACATT GAACAGGGGC TGGAGGCTTG CCTTGCCGGT CTGCTGGTTT CTATTCTGTT CATGATCATC TTCTATAAGA AGTTTGGTCT GATTGCGACC AGTGCTCTGA TTGCCAACTT GATCTTAATC GTCGGCATTA TGTCGCTGTT GCCAGGCGCA ACGCTGAGTA TGCCAGGTAT CGCGGGTATC GTCTTAACCC TTGCGGTGGC GGTCGATGCG AACGTACTGA TCAACGAACG TATTAAAGAA GAGTTGAGCA ACGGACGTAC TGTTCAACAG GCAATTGATG AAGGTTATCG TGGCGCATTC AGTTCTATCT TCGATGCGAA CATCACCACG CTGATTAAAG TCATCATCCT GTACGCAGTG GGTACCGGGG CAATTAAAGG GTTCGCGATT ACTACCGGTA TCGGTGTGGC GACGTCGATG TTTACCGCGA TTGTCGGTAC GCGTGCCATC GTAAACCTGC TATATGGCGG CAAGCGCGTC AAGAAGCTGT CAATCTGA
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Protein sequence | MLNRYPLWKY VMLIVVIVIG LLYALPNLFG EDPAVQITGA RGVAASEQTL IQVQKTLQEE KITAKSVALE EGAILARFDS TDTQLRAREA LMGVMGDKYV VALNLAPATP RWLAAIHAEP MKLGLDLRGG VHFLMEVDMD TALGKLQEQN IDSLRSDLRE KGIPYTTVRK ENNYGLSITF RDAKARDEAI AYLSKRHPDL VISSQGSNQL RAVMSDARLS EAREYAVQQN INILRNRVNQ LGVAEPVVQR QGADRIVVEL PGIQDTARAK EILGATATLE FRLVNTNVDQ AAAASGRVPG DSEVKQTREG QPVVLYKRVI LTGDHITDST SSQDEYNQPQ VNISLDSAGG NIMSNFTKDN IGKPMATLFV EYKDSGKKDA NGRAVLVKQE EVINIANIQS RLGNSFRITG INNPNEARQL SLLLRAGALI APIQIVEERT IGPTLGMQNI EQGLEACLAG LLVSILFMII FYKKFGLIAT SALIANLILI VGIMSLLPGA TLSMPGIAGI VLTLAVAVDA NVLINERIKE ELSNGRTVQQ AIDEGYRGAF SSIFDANITT LIKVIILYAV GTGAIKGFAI TTGIGVATSM FTAIVGTRAI VNLLYGGKRV KKLSI
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