| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_A0056 |
|---|
| Symbol | |
|---|
| ID | 6273408 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010660 |
|---|
| Strand | - |
|---|
| Start bp | 33883 |
|---|
| End bp | 35100 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641728721 |
|---|
| Product | reverse transcriptase |
|---|
| Protein accession | YP_001883112 |
|---|
| Protein GI | 187734335 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3344] Retron-type reverse transcriptase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 135 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAATACC AAAAGCACTG GTCTGGGCAT CATATCTGGA TGTGCGTCGC AACAAGGGAG
CCCCCCGGAT GCGACGGGCA GACTTTGAAA ATGTTCGACC AGCAACGTGA TGGCAATCTA
TACAAGATCT GGAACCGGCT ATGTTCGGGA ACATGGTTTC CGCCACCAGT GCTGGAAAAA
CGGATCCCGA AGTCGAATGG CAAGGAACGC ATTCTGGGGA TCCCAACAGT ATCCGATCGA
ATTGCTCAGG GAGCGATAAA ACTTTTCATG GAAGAAAAGC TTGACTCGAT TTTCCATGCT
GATTCATATG GTTACCGACC AGGCAAATCA GCTCATGACG CTCTGAAACA ATGTGCCATC
CGGTGCTGGC GTTATAGCTG GATACTGGAA GTGGACATCA GTGCGTTTTT CGACCATGTG
AAACATGATC TGGTGCTCAA AGCTCTGGAA CACCACGGGA TGCCTAAATG GGTCATCCTG
TACTGTCGAC GCTGGATGGA AGCGCCAATG CAGAGTTGTG AAAATGGAGA ATTAATAACC
CGAACACGAG GCACTCCGCA GGGCGGGGTC ATTAGTCCGC TACTTGCTAA CTTGTTCCTT
CACTATGCAT TTGATTTGTG GATGGAAAGA GAATATCGGG GGGTACCGTT TGAGAGGTAC
GCTGACGATA TTGTAGTACA TTGTTCACGA ATGAGTGATG CAACAAGGCT AAAGAACAGG
TTATCGGAGC GCTTCTCGGA AGTCGGGCTG GTCCTGAATG CAGGGAAAAC GAATATCGCC
TACATTGACA CGTTTAAAAG GAGAAACGTC GCAACGAGTT TCACCTTTCT CGGATATGAC
TTCAAAGTGC GTACGCTGAA GAATTTCAAA GGCGAACGGT ACCGAAAATG CATGCCGGGT
GCGTCAAATG CAGCAATGCG CAAAATAACA GAAACAATCA AGAAGTGGCG TATACATCGC
TCAACAGCTG AGAGTTTGCT GGATTTTGCG AGGCGCTACA ATGCGATAGT GAGAGGCTGG
ATCGAGTACT ACGGAAAGTT CTGGTCCAGA AATTTCAACT ATCGACTGTG GAGTGCAATG
CAGTCACGTC TGCTCAAGTG GATGCAGTCT AAATACAGAC TTTCGAACCG GAAGGCTCAG
CGAAAGCTGA CGCTGGTAAG GAAGGAGTAT CCGAAGCTAT TTGTTCACTG GTATTTACTA
CGTGCATCAA ATGAGTGA
|
|---|
| Protein sequence | MKYQKHWSGH HIWMCVATRE PPGCDGQTLK MFDQQRDGNL YKIWNRLCSG TWFPPPVLEK
RIPKSNGKER ILGIPTVSDR IAQGAIKLFM EEKLDSIFHA DSYGYRPGKS AHDALKQCAI
RCWRYSWILE VDISAFFDHV KHDLVLKALE HHGMPKWVIL YCRRWMEAPM QSCENGELIT
RTRGTPQGGV ISPLLANLFL HYAFDLWMER EYRGVPFERY ADDIVVHCSR MSDATRLKNR
LSERFSEVGL VLNAGKTNIA YIDTFKRRNV ATSFTFLGYD FKVRTLKNFK GERYRKCMPG
ASNAAMRKIT ETIKKWRIHR STAESLLDFA RRYNAIVRGW IEYYGKFWSR NFNYRLWSAM
QSRLLKWMQS KYRLSNRKAQ RKLTLVRKEY PKLFVHWYLL RASNE
|
|---|
| |