Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SaurJH9_2201 |
Symbol | |
ID | 5169899 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Staphylococcus aureus subsp. aureus JH9 |
Kingdom | Bacteria |
Replicon accession | NC_009487 |
Strand | - |
Start bp | 2341135 |
End bp | 2341818 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 640566590 |
Product | hemolysin III family channel protein |
Protein accession | YP_001247558 |
Protein GI | 148268615 |
COG category | [R] General function prediction only |
COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000726691 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCCAAAT CAACTAAAAA AAGTAATGAC ACAATCGTAG AAACATTTAA GGATATCATC CCTTTATCAT TTGGAGAAGA AATTGGTAAT GCGGCATCTC ATGGTGTTGC AGCTTTGTTA ACATTATTAG TGTTACCCTA TGCGGCTGTG CACAGTTATA TTGCACATGG TACGCTTGCG TCTGTGAGTA TGTCTATTTA TGTTATTTCT ATCTTTATGA TGTTTATTTC ATCTACTATT TATCATTCTA TGCAAAATGA AACACCTCAT AAATATATTT TAAGGATTAT CGATCACAGT ATGATTTACG TAGCAATTTC TGGTACATAT ACGCCTATTT TGTTAACAGT TGTAGGTGGT TGGATAGGTT GGACAGTATT TATTTTATTA TGGGGAACGA CACTTTGGGG GATTTTATAT AAATCCATAG CTGTCAAAGT TAACCAAAAG TTAAGCTTAA TTGTCTATTT AGTGATGGGC TGGGTAGGTA TTATCTTGTT ACCAATTATT TTTATTCGCA CATCATGGAT ATTCATATTA TTCATTTTCT TAGGTGGTGT GTCTTATACA ATTGGTGCAT GGTTTTATGC ACAAAAGAAT AGACCATATT TTCATATGAT TTGGCATATT TTTATTGTAA TAGCATCACT ATTGCATTTA ATTGCGATCT TATATTTTAT GTAG
|
Protein sequence | MSKSTKKSND TIVETFKDII PLSFGEEIGN AASHGVAALL TLLVLPYAAV HSYIAHGTLA SVSMSIYVIS IFMMFISSTI YHSMQNETPH KYILRIIDHS MIYVAISGTY TPILLTVVGG WIGWTVFILL WGTTLWGILY KSIAVKVNQK LSLIVYLVMG WVGIILLPII FIRTSWIFIL FIFLGGVSYT IGAWFYAQKN RPYFHMIWHI FIVIASLLHL IAILYFM
|
| |