Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SaurJH1_0579 |
Symbol | rpoB |
ID | 5315067 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Staphylococcus aureus subsp. aureus JH1 |
Kingdom | Bacteria |
Replicon accession | NC_009632 |
Strand | + |
Start bp | 620019 |
End bp | 623570 |
Gene Length | 3552 bp |
Protein Length | 1183 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 640778666 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_001315724 |
Protein GI | 150393049 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGCAGGTC AAGTTGTCCA ATATGGAAGA CATCGTAAAC GTAGAAACTA CGCGAGAATT TCAGAAGTAT TAGAATTACC AAACTTAATA GAAATTCAAA CTAAATCTTA CGAGTGGTTC CTAAGAGAAG GTTTAATCGA AATGTTTAGA GACATTTCTC CAATTGAAGA TTTTACTGGT AATTTGTCAT TAGAGTTTGT GGATTACCGT TTAGGAGAAC CAAAATATGA TTTAGAAGAA TCTAAAAACC GTGACGCTAC TTATGCTGCA CCTCTTCGTG TAAAAGTGCG TCTAATCATT AAAGAAACAG GAGAAGTTAA AGAACAAGAA GTCTTTATGG GTGATTTCCC ATTAATGACT GATACAGGTA CGTTCGTTAT CAATGGTGCA GAACGTGTAA TCGTATCTCA ATTAGTTCGT TCACCATCCG TTTATTTCAA TGAAAAAATC GACAAAAATG GTCGTGAAAA CTATGATGCA ACAATTATTC CAAACCGTGG TGCATGGTTA GAATATGAAA CAGATGCTAA AGATGTTGTA TACGTACGTA TTGATAGAAC ACGTAAACTA CCATTAACAG TATTGTTACG TGCATTAGGT TTCTCAAGTG ACCAAGAAAT TGTTGACCTT TTAGGTGACA ATGAATATTT ACGTAATACT TTAGAGAAAG ACGGCACTGA AAACACTGAA CAAGCGTTAT TAGAAATCTA TGAACGTTTA CGTCCAGGTG AACCACCAAC TGTTGAAAAT GCTAAAAGTC TATTGTATTC ACGTTTCTTT GATCCAAAAC GCTATGACTT AGCAAGCGTG GGTCGTTATA AAACAAACAA AAAATTACAT TTAAAACATC GTTTATTTAA TCAAAAATTA GCTGAGCCAA TTGTAAATAC TGAAACTGGT GAAATTGTAG TTGAAGAAGG TACAGTGCTT GATCGTCGTA AAATCGACGA AATCATGGAT GTACTTGAAT CAAATGCAAA CAGCGAAGTG TTTGAATTGC ATGGTAGCGT TATAGACGAG CCAGTAGAAA TTCAATCAAT TAAAGTATAT GTTCCTAACG ATGATGAAGG TCGTACGACA ACTGTAATTG GTAATGCTTT CCCTGACTCA GAAGTTAAAT GCATTACACC AGCAGATATC ATTGCTTCAA TGAGTTACTT CTTTAACTTA TTAAGCGGTA TTGGATATAC AGATGATATT GACCATTTAG GTAACCGTCG TTTACGTTCT GTAGGTGAAT TACTACAAAA CCAATTCCGT ATCGGTTTAT CAAGAATGGA AAGAGTTGTA CGTGAAAGAA TGTCAATTCA AGATACTGAG TCTATCACAC CTCAACAATT AATTAATATT CGACCTGTTA TTGCATCTAT TAAAGAATTC TTTGGTAGCT CTCAATTATC ACAATTCATG GACCAAGCAA ACCCATTAGC TGAGTTAACG CATAAACGTC GTCTATCAGC ATTAGGACCT GGTGGTTTAA CACGTGAACG TGCTCAAATG GAAGTACGTG ACGTTCACTA CTCTCACTAT GGCCGTATGT GTCCAATTGA AACACCTGAG GGACCAAACA TTGGATTGAT TAACTCATTA TCAAGTTATG CACGTGTAAA TGAATTCGGC TTTATTGAAA CACCATATCG TAAAGTTGAT TTAGATACAC ATGCTATCAC TGATCAAATT GACTATTTAA CAGCTGACGA AGAAGATAGC TATGTTGTAG CACAAGCAAA CTCTAAATTA GATGAAAATG GTCGTTTCAT GGATGATGAA GTTGTATGTC GTTTCCGTGG TAACAATACA GTTATGGCTA AAGAAAAAAT GGATTATATG GATGTATCGC CGAAGCAAGT TGTTTCAGCA GCGACAGCAT GTATTCCATT CTTAGAAAAC GATGACTCAA ACCGTGCATT GATGGGTGCG AACATGCAAC GTCAAGCAGT GCCTTTGATG AATCCAGAAG CACCATTTGT TGGAACAGGT ATGGAACACG TTGCAGCACG TGATTCTGGT GCAGCTATTA CAGCTAAGCA CAGAGGTCGT GTTGAACATG TTGAATCTAA TGAAATTCTT GTACGTCGTC TAGTTGAAGA GAACGGCGTT GAGCATGAAG GTGAATTAGA TCGCTATCCA TTAGCTAAAT TTAAACGTTC AAACTCAGGT ACATGTTACA ACCAACGTCC AATCGTTGCA GTTGGAGATG TTGTTGAGTA TAACGAGATT TTAGCAGATG GACCATCTAT GGAATTAGGA GAAATGGCAT TAGGTAGAAA CGTAGTAGTT GGTTTCATGA CTTGGGACGG TTACAACTAT GAGGATGCCG TTATCATGAG TGAAAGACTT GTGAAAGATG ACGTGTATAC TTCTATTCAT ATTGAAGAGT ATGAATCAGA AGCACGTGAT ACTAAGTTAG GACCTGAAGA AATCACAAGA GATATTCCTA ATGTTTCTGA AAGTGCACTT AAGAACTTAG ACGATCGTGG TATCGTTTAT ATTGGTGCAG AAGTAAAAGA TGGAGATATT TTAGTTGGTA AAGTAACGCC TAAAGGTGTA ACTGAGTTAA CTGCCGAAGA AAGATTGTTA CATGCAATCT TTGGTGAAAA AGCACGTGAA GTTAGAGATA CTTCATTACG TGTACCTCAC GGCGCTGGCG GTATCGTTCT TGATGTAAAA GTATTCAATC GTGAAGAAGG CGACGATACA TTATCACCTG GTGTAAACCA ATTAGTACGT GTATATATCG TTCAAAAACG TAAAATTCAT GTTGGTGATA AGATGTGTGG TCGACATGGT AACAAAGGTG TCATTTCTAA GATTGTTCCT GAAGAAGATA TGCCTTACTT ACCAGATGGA CGTCCGATCG ATATCATGTT AAATCCTCTT GGTGTACCAT CTCGTATGAA CATCGGACAA GTATTAGAGC TACACTTAGG TATGGCTGCT AAAAATCTTG GTATTCACGT TGCATCACCA GTATTTGACG GTGCAAACGA TGACGATGTA TGGTCAACAA TTGAAGAAGC TGGTATGGCT CGTGATGGTA AAACTGTACT TTATGATGGA CGTACAGGTG AACCATTCGA TAACCGTATT TCAGTAGGTG TAATGTACAT GTTGAAACTT GCGCACATGG TTGATGATAA ATTACATGCG CGTTCAACAG GACCATATTC ACTTGTTACA CAACAACCAC TTGGCGGTAA AGCGCAATTC GGTGGACAAC GTTTCGGTGA GATGGAGGTA TGGGCACTTG AAGCATATGG TGCTGCATAC ACATTACAAG AAATCTTAAC TTACAAATCC GATGATACAG TAGGACGTGT GAAAACATAC GAGGCTATTG TTAAAGGTGA AAACATCTCT AGACCAAGTG TTCCAGAATC ATTCCGAGTA TTGATGAAAG AATTACAAAG TTTAGGTTTA GATGTAAAAG TTATGGATGA GCAAGATAAT GAAATCGAAA TGACAGACGT TGATGACGAT GATGTTGTAG AACGCAAAGT AGATTTACAA CAAAATGATG CTCCTGAAAC ACAAAAAGAA GTTACTGATT AA
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Protein sequence | MAGQVVQYGR HRKRRNYARI SEVLELPNLI EIQTKSYEWF LREGLIEMFR DISPIEDFTG NLSLEFVDYR LGEPKYDLEE SKNRDATYAA PLRVKVRLII KETGEVKEQE VFMGDFPLMT DTGTFVINGA ERVIVSQLVR SPSVYFNEKI DKNGRENYDA TIIPNRGAWL EYETDAKDVV YVRIDRTRKL PLTVLLRALG FSSDQEIVDL LGDNEYLRNT LEKDGTENTE QALLEIYERL RPGEPPTVEN AKSLLYSRFF DPKRYDLASV GRYKTNKKLH LKHRLFNQKL AEPIVNTETG EIVVEEGTVL DRRKIDEIMD VLESNANSEV FELHGSVIDE PVEIQSIKVY VPNDDEGRTT TVIGNAFPDS EVKCITPADI IASMSYFFNL LSGIGYTDDI DHLGNRRLRS VGELLQNQFR IGLSRMERVV RERMSIQDTE SITPQQLINI RPVIASIKEF FGSSQLSQFM DQANPLAELT HKRRLSALGP GGLTRERAQM EVRDVHYSHY GRMCPIETPE GPNIGLINSL SSYARVNEFG FIETPYRKVD LDTHAITDQI DYLTADEEDS YVVAQANSKL DENGRFMDDE VVCRFRGNNT VMAKEKMDYM DVSPKQVVSA ATACIPFLEN DDSNRALMGA NMQRQAVPLM NPEAPFVGTG MEHVAARDSG AAITAKHRGR VEHVESNEIL VRRLVEENGV EHEGELDRYP LAKFKRSNSG TCYNQRPIVA VGDVVEYNEI LADGPSMELG EMALGRNVVV GFMTWDGYNY EDAVIMSERL VKDDVYTSIH IEEYESEARD TKLGPEEITR DIPNVSESAL KNLDDRGIVY IGAEVKDGDI LVGKVTPKGV TELTAEERLL HAIFGEKARE VRDTSLRVPH GAGGIVLDVK VFNREEGDDT LSPGVNQLVR VYIVQKRKIH VGDKMCGRHG NKGVISKIVP EEDMPYLPDG RPIDIMLNPL GVPSRMNIGQ VLELHLGMAA KNLGIHVASP VFDGANDDDV WSTIEEAGMA RDGKTVLYDG RTGEPFDNRI SVGVMYMLKL AHMVDDKLHA RSTGPYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEILTYKS DDTVGRVKTY EAIVKGENIS RPSVPESFRV LMKELQSLGL DVKVMDEQDN EIEMTDVDDD DVVERKVDLQ QNDAPETQKE VTD
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