| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_3652 |
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| Symbol | |
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| ID | 5077800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009427 |
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| Strand | + |
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| Start bp | 282268 |
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| End bp | 284238 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640481375 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001166037 |
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| Protein GI | 146275877 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGGGCAT TCACCGAATT TCTGAAGCTG GACACCAGCG ATGCGGAACT GACTCGAGCG
CAGTTCCGCT CGTTTTCCAG TCAGATGCCG CTGCTGTACG GGATTCTGGT CTGTAACGCC
CTGGCCATCG CCATCGAGTT CTTCGATGCC GGCCAGTTGT TCAAGACCCT GCTGATGCCC
GCCTTCATCG GCGGCCTCGC ACTGTGGCGC GGGGTCTGGT GGTGGCAGCA GCCTGATCCG
GCAAGCCTTT CGGACAGCTA CATCGCCACT TGTCTTGCTC GGACATGCAG GCTGGCAGTC
GCGATGACCC TGGCTTTCGA GGCATGGTGC ATCTGGGTCT ATCAGGACGG CGATCCCTAC
GCGCGGGGCA ATCTCACCTT CTTCCTGGGC CTTACGGAAG TGAGCACGGT GTTCTGCCTC
ATGACCCTGC GGGCCGCCGC GATGCGGGTG GCGGTGGTCA GCACGTTCTC CTTCGCGTTC
TATTTCTCGT GGGCCGAAGA TGGCCGCATG CTGTCCCAGT CGGTCGTGCT TTCGCTGGTC
TGCGCCGGGA TGGTGGTGGT GACGCATCGC TACAACCTTT CGTTTTCGGA ACTGATCCGC
TCGCAACGCA TCCTGCGCAC GCGTCAGCTC GAAACCGAGA AGCTGAGCGA AGAGAACCGC
CGGATCGCGT TCAGCGACCC CCTGAGCGGC TTGCCCAACC GGCGCGAACT GCTTTCCCGC
CTCGATCGCC TCGAAGGCGG TCCGGACCCC GTCAGGGATA CGCTCGCGGT GATCTTCATC
GATCTCGACG GGTTCAAGGC GGTCAACGAC GAACACGGTC ATCAGGCGGG CGACGCGCTG
ATCCGCAGCA TCTGCCAACG GTTGAGCCGG CACTGCCCGG CCCACGCGCG GCTGGCCCGT
GTCGGCGGCG ACGAGTTCGC GATTCTGTTC GAGGGCCACT CCGCCGAAGC AGAGGCAATC
GCCCTCGCAT CAACCCTGCT TGAAGAGATA TCGTTGCCGG TTCTTGTCGA ACGTCACGTC
CTGCAGGTCG GCGGCAGCAT CGGGGTTGCC GCGAATACCG ACATGGCGGC CACTCCGCGC
GAACTGCTGC GCCGGGCCGA TACCGCGATG TACCACGCAA AGACGCAGGG GAAGGGCCAG
ATCGCGGTCT ACGACGCCGA TTTCGACGAA GGCCGCCTGC GCCGTCTGGC GGTGGAGACG
CAGATCGGAC GCGGCCTTTC GCGCGGGGAA TTCGATGTCC ACTACCAGCC GGAAGTCGAT
GCGCAGACCG GCGAGGTCGT CGCGGTCGAG GCGCTGCTAC GCTGGCCCCG GCGCCCCGAA
GGTCCGCTGC CGCCGGACGA GTTCATCGAG ATCGCTGAAG CCACCGGCCA GATCCACCCG
CTAGGCATGT TCGTGCTCGA ACGCGCCTGC CGCGATATCG CGCCGCTCGG TTCCTTGCGC
CTGAGCGTCA ACGTCAGCCC CGCGCAGTTC CGCGATTCCC ATTTCGAACG GCAGGTCGCC
CACGTGCTGG AGCAGACACG GTTCCCGCCC GAGCGGCTCC AGTTCGAGAT CACCGAGGGT
TACCTGCTGG CCAATCCCGA GCGCGTGGTG CGGGCCGTCG AAACCTTCAA GGCGCGCGGC
ATGTCGATAG CGCTGGATGA TTTCGGCACC GGATTCACCA GCATCCACTA CCTGCGCAGC
TACGGCTTCA GCCACATCAA GATAGACAAG TCACTGCTCG ATGGGCTCGC GCCCGGCAGC
AAGGCGGCGA TGCTGGTCAC CGGGGCGATC ATGCTGGCCT GCGGGCTCGA CATGCGGGTG
ATTGCCGAAG GCGTGGAGAC AGAGGAGCAG GCCAACTTGC TGCGCCGCGC CGGTTGCCAC
GAATTGCAGG GCTACCTGTT CGGCAGGCCC ATGGCGCTGG CCGAATTCGT CCCCTGGATC
GAACGGGCGA TGCGCAGCCT GGCCCAGGAC CCGGTGCGCA TCGCCATCTG A
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| Protein sequence | MRAFTEFLKL DTSDAELTRA QFRSFSSQMP LLYGILVCNA LAIAIEFFDA GQLFKTLLMP
AFIGGLALWR GVWWWQQPDP ASLSDSYIAT CLARTCRLAV AMTLAFEAWC IWVYQDGDPY
ARGNLTFFLG LTEVSTVFCL MTLRAAAMRV AVVSTFSFAF YFSWAEDGRM LSQSVVLSLV
CAGMVVVTHR YNLSFSELIR SQRILRTRQL ETEKLSEENR RIAFSDPLSG LPNRRELLSR
LDRLEGGPDP VRDTLAVIFI DLDGFKAVND EHGHQAGDAL IRSICQRLSR HCPAHARLAR
VGGDEFAILF EGHSAEAEAI ALASTLLEEI SLPVLVERHV LQVGGSIGVA ANTDMAATPR
ELLRRADTAM YHAKTQGKGQ IAVYDADFDE GRLRRLAVET QIGRGLSRGE FDVHYQPEVD
AQTGEVVAVE ALLRWPRRPE GPLPPDEFIE IAEATGQIHP LGMFVLERAC RDIAPLGSLR
LSVNVSPAQF RDSHFERQVA HVLEQTRFPP ERLQFEITEG YLLANPERVV RAVETFKARG
MSIALDDFGT GFTSIHYLRS YGFSHIKIDK SLLDGLAPGS KAAMLVTGAI MLACGLDMRV
IAEGVETEEQ ANLLRRAGCH ELQGYLFGRP MALAEFVPWI ERAMRSLAQD PVRIAI
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