Gene Saro_2527 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_2527 
Symbol 
ID3916848 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand- 
Start bp2730746 
End bp2731807 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content61% 
IMG OID640445284 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_497797 
Protein GI87200540 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.717834 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGTCA ACATCAAGAA CTGGCAGGAA CTGAAGAAGC CCAACAATCT CGAGATCAAG 
CCGGGCAACG ATTCCAAGCG CCGTGCGACT TTCGTCGCCG AGCCGCTTGA GCGTGGTTTT 
GGTCTCACGC TCGGCAACGC GCTGCGTCGC GTGCTGCTCT CCTCGCTTCA GGGCGCGGCG 
GTCACCTCGA TCAAGATCGA GAACGTTCTG CACGAATTCT CGTCGCTCGC CGGCGTGCGC 
GAGGACGTCA CCGACATCGT GCTCAACGTC AAGCAGATCG CGCTCAAGAT GCAGGGCGAA 
GGCCCCAAGC GTCTCCAGCT TTCGGCAACC GGTCCTGGCG AAGTCAAGGC CGGCGACATT 
GCCGTGACGG GCGACATCGA GGTCATGAAC AAGGACCTCG TGATCTGCCA TCTCGACGAA 
GGCGCGACCT TCAACATGGA ACTGACCGTC GATACCGGCA AGGGCTACGT CCCCGCCGTG 
TCGAACCGTC CGGTAGACGC TCCGATCGGT CTGATCCCGG TTGACTCGCT CTATTCGCCG 
GTCCGTCAGG TCTCCTACAA GGTCGAGAAC GCCCGCATCG GTCAGGAGCT TGACTACGAC 
AAGCTCAACC TGACGGTCGA AACCGACGGC ACCGTCACTC CGGAAGACGC CGTGGCCTAT 
GCCGCGCGCA TCCTTCAGGA CCAGCTTGCG CTGTTCGTCC ACTTCGACGA CCAGGTTCCG 
GTCGGCCACG TTCCGATGGT CGCGGGCGTT CCTGCCCACG CGCCGGAGGA AAGCGACGCG 
AACCAGCTCA ACCGCTACCT TCTCAAGAAG GTGGACGAGC TGGAACTGTC GGTTCGCTCG 
GCCAACTGCC TCAAGAACGA CAACATCATC TACATCGGCG ACCTGGTCCA GAAGACCGAA 
GCCGAGATGC TGCGCACGCC GAACTTCGGC CGCAAGTCGC TCAACGAGAT CAAGGAAGTT 
CTCTCCTCGA TGGGTCTGCG CCTCGGCATG GACATCCCCG GCTGGCCGCC GGAGAACATC 
GAAGAGATGG CCAAGAAGCT CGAACAAGAG CTTCTGGGCT AA
 
Protein sequence
MTVNIKNWQE LKKPNNLEIK PGNDSKRRAT FVAEPLERGF GLTLGNALRR VLLSSLQGAA 
VTSIKIENVL HEFSSLAGVR EDVTDIVLNV KQIALKMQGE GPKRLQLSAT GPGEVKAGDI 
AVTGDIEVMN KDLVICHLDE GATFNMELTV DTGKGYVPAV SNRPVDAPIG LIPVDSLYSP 
VRQVSYKVEN ARIGQELDYD KLNLTVETDG TVTPEDAVAY AARILQDQLA LFVHFDDQVP 
VGHVPMVAGV PAHAPEESDA NQLNRYLLKK VDELELSVRS ANCLKNDNII YIGDLVQKTE 
AEMLRTPNFG RKSLNEIKEV LSSMGLRLGM DIPGWPPENI EEMAKKLEQE LLG