| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_2235 |
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| Symbol | |
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| ID | 3916551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | + |
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| Start bp | 2377635 |
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| End bp | 2379638 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640444989 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_497506 |
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| Protein GI | 87200249 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTCGA ACGACAAGAC CGACAGCGGC GATGCTCCGC TGATCGACCT CAACGATGCA
TCGATCAAGA AGCTGATCGC CCGCGCCAAG CGGCGCGGCA TCATCACCTA TGACGAGCTG
AACGAGGCCC TGCCCCAGGA CCAGATGTCC TCCGAGCAGA TCGAGGACAT CATGGCCGCG
ATCTCGGAGA TGGGCGTCAA CATCGTCGAG AGCGATGAAG ATGCCGTCGA TCCTGAAGAG
CGTGCGCAGG ACGACGAACT CGACGAGGCC GAGACGGTCG AGGACCGCCC CGACGTCATC
AAGCGCAAGG AAACGGTCGA GCGCACCGAC GACCCGGTCC GCATGTACCT GCGCGAAATG
GGCGCGGTGG AACTGCTCAG CCGCGAGGGC GAAATCGCGA TCGCGAAGCG CATCGAGGCC
GGCCGCGACA CGATGATCAT GGGCCTTTGC GAAAGCCCGA TCACCTTCCA CGCGATCATC
CAGTGGTCCG AGGCGCTCAA CGCCGGGGAA ATGCAACTGC GCGAGATCCT CGATCTCGAC
GCGATGCTTT CCAAGGAGCC GCAGCCCGAG AACCTCTCCG AGGACGGCGA GGAAGCCGAG
CCCGAAATCA GCGAAGCCAC CGCCGGTCCC ACCTTCAAGG AGGAAGAGGA CATCGAGGAG
GAGGAAACCG CTGACGACGA GGACGACGAA CTGCGCGAAC GCCGCGCGCG TCCGGCCGAG
GAAGAGGAAG AGGACAACAC CCTCAGCCTC GCCCAGATGG AAGCCCAGCT CAAGCCTGCG
GCGCTGGAGC GTTTCGCGGA AATCACTTCG CTGTTCCGCC AGTTCGAGAA GATCCAGGCT
GAACGCCTCA ATGCGCTCGG CATGGGCAAC GATTTCCCGG CCGCGAGGGA AACGCAGTAC
CAGAAGCTGC GCGAAGACCT GACGGCACAG GTGGAATCGG TCCAGTTCCA CGCCTCGAAG
ATCGAATACC TCGTCGACAA CCTCTATGCG TTCAACCGCA GGCTGACGAC GCTGGGCGGG
CAGATGCTGC GCCTCGCCGA ACGCCACAAA GTGCCGCGCA AGGACTTCCT CGACATGTAC
GTCGGGCGCG AGCTTGACGA TGGCTGGTTG CAGGGCCTTG CCGGGCGCGA CAAGCGCTGG
GCGGCGTTCG CGGCCAACGA GGCGACCCCG GTCGAGCGCA TCCGTGCCGA GATATCGGAC
ATCGCCTCGG CCACCGGCAT GTCGCTGGGC GAATTCCGCC GCATCGTGAA CATGGTCCAG
AAGGGCGAGC GCGAGGCACG CATCGCCAAG AAGGAAATGG TCGAGGCCAA CCTGCGCCTC
GTGATCTCGA TTGCCAAGAA GTACACGAAC CGCGGCCTGC AGTTCCTCGA CCTGATCCAG
GAAGGCAACA TCGGCCTGAT GAAGGCGGTC GACAAGTTCG AGTACCGCCG CGGCTACAAG
TTCTCGACCT ACGCCACGTG GTGGATCAGG CAGGCGATCA CGCGCTCGAT CGCCGACCAG
GCTCGCACGA TCCGTATCCC GGTCCACATG ATCGAGACGA TCAACAAGCT GGTCCGCACC
AGCCGCCAGT TCCTGCACGA GCAGGGCCGC GAGCCAACGC CCGAGGAAAT GGCCGAGCGT
CTGTCGATGC CGCTCGAAAA GGTCCGCAAG GTGATGAAGA TCGCCAAGGA GCCGATCTCT
CTCGAAACGC CGATCGGTGA CGAGGAAGAT TCGCATCTGG GCGATTTCAT CGAGGACAAG
AACGCGATCA TCCCGGTGGA CGCCGCGATC CAGGCGAACC TCAAGGAAAC GGTCACCCGC
GTTCTTGCCA GCCTCACCCC GCGCGAGGAA CGCGTGCTGC GCATGCGCTT CGGCATCGGC
ATGAACACCG ACCACACGCT CGAGGAAGTC GGCCAGCAGT TCTCGGTCAC CCGCGAACGT
ATCCGCCAGA TCGAGGCGAA GGCGCTGCGC AAGCTCAAGC ACCCGAGCCG CAGCCGCAAG
ATGCGCTCGT TCCTTGACCA ATGA
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| Protein sequence | MASNDKTDSG DAPLIDLNDA SIKKLIARAK RRGIITYDEL NEALPQDQMS SEQIEDIMAA
ISEMGVNIVE SDEDAVDPEE RAQDDELDEA ETVEDRPDVI KRKETVERTD DPVRMYLREM
GAVELLSREG EIAIAKRIEA GRDTMIMGLC ESPITFHAII QWSEALNAGE MQLREILDLD
AMLSKEPQPE NLSEDGEEAE PEISEATAGP TFKEEEDIEE EETADDEDDE LRERRARPAE
EEEEDNTLSL AQMEAQLKPA ALERFAEITS LFRQFEKIQA ERLNALGMGN DFPAARETQY
QKLREDLTAQ VESVQFHASK IEYLVDNLYA FNRRLTTLGG QMLRLAERHK VPRKDFLDMY
VGRELDDGWL QGLAGRDKRW AAFAANEATP VERIRAEISD IASATGMSLG EFRRIVNMVQ
KGEREARIAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV DKFEYRRGYK
FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLVRT SRQFLHEQGR EPTPEEMAER
LSMPLEKVRK VMKIAKEPIS LETPIGDEED SHLGDFIEDK NAIIPVDAAI QANLKETVTR
VLASLTPREE RVLRMRFGIG MNTDHTLEEV GQQFSVTRER IRQIEAKALR KLKHPSRSRK
MRSFLDQ
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