Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_1982 |
Symbol | |
ID | 3917301 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | + |
Start bp | 2099682 |
End bp | 2103176 |
Gene Length | 3495 bp |
Protein Length | 1164 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640444733 |
Product | transcription-repair coupling factor |
Protein accession | YP_497256 |
Protein GI | 87199999 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCCGATC TCGACCGCAT CCTGTCGGCC AAGTCGCCGC TAACCCTGTC GTCCGTAGCA CGCGGCGCGC AGCCGCTCGT GCTCGCCGAC CTTGCTCGCG CTGCGCGCGG CCGCACCGTA TTCATCGCGC CCGACGAGGC CGCCATGCGC GCCATTGTCG ACAGCGCGGC ATACTTCGCC CCGGACCTCG ACGTCATAGA CTTTCCGGCA TGGGACTGCC TGCCGTTCGA CCGCGCTTCG CCGGCGCTTT CCGTCAGCGC CCGCCGTCTG GCCGCATTGC AGAAGCTGCA GCACACGCGT TCCGGCCCCC AGCTTCTCGT CACGACGATC AATGCCGCGC TCCAGCGCGT ACTCACGCCC TTCCGCATCC GCGAATCCAC ACGCCTGCTC ACGCCCGGCA CCGAAATCGG CCGGGAAAGC CTGATCGCTC TCCTCCAGCG ACAGGGCTAT TCGCGCACTG ACACCGTCGT CGATGCGGGC GAATACGCAG TGCGCGGTTC GGTCTTCGAC ATCTTTCCGT CAGGCCTCGA CCACGGCCTC AGGCTCGACT TCTTCGGAGA CGAACTGGAA ACCCTGCGCC TGTTCGATCC GAACACCCAA CGCTCGGTGC AGCCGGTAGA AACGCATCTT CTGCTCCCGG CAAGCGAAGC CCTGCTCGAT GAAGACAGCA TCAAGCGCTT CCGCAGTCGC TATCGCGAAA TGTTCGGCGC GAACGCCACT GGCGACCCGC TGTATCAGGC AATCAGCGAT GGCCGCCGCC TTGCCGGAAT GGAACACTGG CTGCCGCTGT TCGAGGACAG GGTCGTCACG CTCTTCGATC ACCTTGGCGA GAACGATCTC GTCCTGATCG ACACGACCGC GATCAAGGCG GCCGAGCAGC GCATCGCGGA CATCGCGGAC TATCATCAGT CGCGTCTGGA TTCGTCGTCC AAGGCGCCGG GGAGCTATCG CCCGCTCTCG GAAAGCGCCC TGTACCTTAC GCGTGACGAA CTGGATCGCG CCCTGGCGGG CTGGCCCGTC CACCGCACCA CGATCTTTGC CGAGCCGGAA TCGAAGCACG TCATCGATTT CGGCTTTGCG TCCAGTCACG ATTTCACCCC CGAACGCGCG GCGGCGGGAA GTGGCGGCGG GAACATCTAC GAAGCAGCCG CCAAATACAT CTCGGCGCTC GGCACGCGCG GCAAGAAGCC GATCATTGCC GCTTATACCT CGGGGTCGCG TTCGCGCCTT GCCTCGCTTC TGGCCGAGGC AGGCAAGTTC ACGCCTCAGA TAGCAGAGAA CTGGCAGCAG GCACTGGGCC TTGCCGCATC GGGCAAGCCG GTCGCCATCG TCCTGCCGCT CGAACAGGGC TTCGCCAACG ACGACCTCGA ACTGCTTACC GAGCAGGACA TCCTGGGCGA CCGCCTCGTC CGCAGGAAAA GGAAGCGCAA GGACGCCGAT GCCTTCCTGG CCGAGCTTTC CGCGCTTACC CCGGGCGATC TGGTGGTCCA CATGGATCAC GGCATCGGGC GCTACATCGG GCTGGAAGCC GTCGCCGTCG GCGCTTCTCC CCATGACTGC GTCCAGCTCG AATACGCCGG TGGCGACAAG CTCTACATCC CCGTCGAGAA TCTCGACGTA CTCTCTCGCT ACGGCTCGGA CGCCGAGGGC GTGTCGCTCG ACAAGCTCGG CGGCGAGGCA TGGCAGCGCC GCAAGGCGCG CATGCGCGAG CGCATCCTCG AGATGGCCGG CCAGCTCATG GCAACGGCCG CGCATCGCGC CCTTCGACAG GGTCTGGTCC TGCCGGTCGA CCCCGCCAGC TACGGCCCCT TCATCGACCG CTTCCCCTGG GACGAAACGG AAGACCAGGA GCGCGCCATC GACGACGTCC TCGGAGACAT GGCCGAGGGC AAGCCGATGG ATCGTCTGGT CTGCGGCGAT GTCGGCTTCG GCAAGACCGA GGTTGCCCTC CGCGCTGCGT TTGTCGCGGC GATGCAAGGC GTTCAGGTGG CCGTGGTTGC GCCAACTACC CTGCTCGCGC GGCAGCACTA CGCGAACTTC GTCGAACGTT TCAACGGCTT CCCCCTCCAG ATCGGCCGCC TCTCACGCCT CGTGCCGGCC AAGGAAGCCA GCGAAACGAG GGCCGGGCTT GCAGATGGGC GAGTCGATAT CGTCATCGGC ACACACGCGC TGCTGTCGAA GTCGGTCGAG TTCAAGCGCC TGGGCCTTGT CATCGTGGAC GAGGAACAGC GCTTTGGCGT GACCCACAAG GAGAAGCTCA AGGAACTGAA GGCGGACGTC CACGTCCTGA CTCTCACAGC CACTCCGATT CCGCGCACGC TGCAGATGGC GATGTCCGGG CTACGCGAGC TTTCGACGAT CCAGACCCCG CCGGTCGATC GCCTCGCCAC GCGCACCTAC GTCATGCCGT GGGACGACAT GGTCATGCGC GAAGCCCTCC TGCGCGAACA CCAGCGCGGC GGGCAGAGTT TCATCGTCGT GCCGCGCATT GCCGACATGC CGGAACTCGA GGAATGGCTC CGGCTCAATG TCCCCGAAGT TCGCTTCGTC ACCGCGCACG GCCAGATGAG CCCGACCGAA GTCGAGGACC GCATGGGCGC TTTCTACGAG AAAAAGTACG AAGTGCTGCT GTCCACCACC ATCGTGGAAA GCGGCATCGA CATTCCTTCG GCCAACACCA TCGTCATCCA CCGCGCCGAC CGCTTCGGGC TCGCCCAGCT CTACCAGCTT CGCGGGCGCG TCGGTCGCGG CAAAATCCGC GCCTACGCCT ATCTTACCGT GCCCGAGGAC ATGGCCCTGT CCGAAGTCGC GGAAAAGCGC CTCAAGGTGC TCGGCGACCT CGACAGCCTC GGCGCCGGCT TCCAGCTCGC CAGCCATGAT CTCGACATTC GCGGCGCCGG CAACCTGCTG GGCGACGAGC AGTCGGGCCA TATCAAGGAA GTCGGCTTCG AACTCTACCA GTCGATGCTC GAGGACGCGA TCCTCGCCGC CAAGGCAGGC GACATCGGCC TTGCCCGCGA GCGCGAGGCC TTGAGCCCGC AAATTACCCT CGACGCCCCT ATCATGATCC CCGAGGACTA CGTTCCCGAC CTCGCCGTGC GCATGGCGCT CTACCGCCGC ATGAACGACG CCGACGGACC GGATGCGGTC GAGGCATTGG CCGCCGAGAT GATCGACCGC TTCGGCCCCC TGCCCGCGCC CACGCAGAAC CTGCTGCGCC TGATCGAAGT AAAGCGCCAG GCCATCGCGG CAAACATCGC CAAGATCGAC GTGGGCCCCA AGGGCGCGCT GGTCAGCTTC CACAAGGACA CCTTCCCCGA CCCGGTCGGC CTCATCGGCT ATGTCGAGCG CCTGAACGGC GTCGCCAAGC TGCGCCCGGA CAACAAGCTC GTCATCCAGC GTGCATGGGG AACGGCGGAG GGACGGCTCA ACGGCCTCGT GCAGCTCACC AAGGGCCTCT CGGCGATCGC CCGTCGTGCC AGGAAAGCGG CCTAG
|
Protein sequence | MSDLDRILSA KSPLTLSSVA RGAQPLVLAD LARAARGRTV FIAPDEAAMR AIVDSAAYFA PDLDVIDFPA WDCLPFDRAS PALSVSARRL AALQKLQHTR SGPQLLVTTI NAALQRVLTP FRIRESTRLL TPGTEIGRES LIALLQRQGY SRTDTVVDAG EYAVRGSVFD IFPSGLDHGL RLDFFGDELE TLRLFDPNTQ RSVQPVETHL LLPASEALLD EDSIKRFRSR YREMFGANAT GDPLYQAISD GRRLAGMEHW LPLFEDRVVT LFDHLGENDL VLIDTTAIKA AEQRIADIAD YHQSRLDSSS KAPGSYRPLS ESALYLTRDE LDRALAGWPV HRTTIFAEPE SKHVIDFGFA SSHDFTPERA AAGSGGGNIY EAAAKYISAL GTRGKKPIIA AYTSGSRSRL ASLLAEAGKF TPQIAENWQQ ALGLAASGKP VAIVLPLEQG FANDDLELLT EQDILGDRLV RRKRKRKDAD AFLAELSALT PGDLVVHMDH GIGRYIGLEA VAVGASPHDC VQLEYAGGDK LYIPVENLDV LSRYGSDAEG VSLDKLGGEA WQRRKARMRE RILEMAGQLM ATAAHRALRQ GLVLPVDPAS YGPFIDRFPW DETEDQERAI DDVLGDMAEG KPMDRLVCGD VGFGKTEVAL RAAFVAAMQG VQVAVVAPTT LLARQHYANF VERFNGFPLQ IGRLSRLVPA KEASETRAGL ADGRVDIVIG THALLSKSVE FKRLGLVIVD EEQRFGVTHK EKLKELKADV HVLTLTATPI PRTLQMAMSG LRELSTIQTP PVDRLATRTY VMPWDDMVMR EALLREHQRG GQSFIVVPRI ADMPELEEWL RLNVPEVRFV TAHGQMSPTE VEDRMGAFYE KKYEVLLSTT IVESGIDIPS ANTIVIHRAD RFGLAQLYQL RGRVGRGKIR AYAYLTVPED MALSEVAEKR LKVLGDLDSL GAGFQLASHD LDIRGAGNLL GDEQSGHIKE VGFELYQSML EDAILAAKAG DIGLAREREA LSPQITLDAP IMIPEDYVPD LAVRMALYRR MNDADGPDAV EALAAEMIDR FGPLPAPTQN LLRLIEVKRQ AIAANIAKID VGPKGALVSF HKDTFPDPVG LIGYVERLNG VAKLRPDNKL VIQRAWGTAE GRLNGLVQLT KGLSAIARRA RKAA
|
| |