| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1770 |
|---|
| Symbol | |
|---|
| ID | 3918329 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 1864289 |
|---|
| End bp | 1867936 |
|---|
| Gene Length | 3648 bp |
|---|
| Protein Length | 1215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640444511 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_497044 |
|---|
| Protein GI | 87199787 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.183542 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAAAAGC AGGCCGCGCC TCTCGCAAGA GCGCGGCCTT TTTCCTACCT TGTACACATG
CCCCATGCCG CCTTCGTCCC GCTTCGCATC TTCTCGTCCT ACACGATGCT CGACGGCGCC
ATCGACCCGA AGGCTATCGC CAAGACCGCC GCCGAGCGGG GCTTTCCCGC CGCCGCCATC
ACAGATCGCA ACGGGCTCTA CGGTAGCGTG GCCTATGCCA AGGCGTGCAA GGACATGGGC
GTCCAGCCGG TCATCGGCAC GATGCTCGCC GTAGCCCGTC CCGAACGCGA CGGCGCGGCA
ACCGGCTTCG GTCCGGCCGC ACCGACGATC GACTGGCTGG CCCTCTATGC GCAGGATGCC
AGGGGCTATG ACAACCTTTG CCACCTCGTC AGCCGCGCCC ATCTCGACCG GCCGCTCGAA
TTTGCGCCGC ACGTCGTCCT GGCGGATCTC GTCGGCCATA CCGACGGCCT CATCTGCCTT
ACCGCCGCCA GCGAAGGCGC ACTGGCGCAG CTTCTTGCCG GAGGCCAGCA AAGCGCCGCC
GAGGCCTATG TCGACCGGCT GCTCGAACTG TTCCCCGAAC GGCTCTACAT CGAGATAGCC
CGGCGCAACG ATGCGGTGGA GGAAGCGTCC GAAACCGCGC TCATCGATCT CGCATACGCG
CGGGACCTGC CGCTGGTTGC CACGAACCCC GCCTGCTTTG CAGAGCGGAC TTTCTACGAT
GCGCACGATG CCATGCTCTG CATCGCCAGT TCCACCCATG TCGATAGCGC GGATCGCCCG
CGCTCCAGCA AGGAATGGTG GATCAAGCCC GCGGCGGTCA TGGAGGAACT GTTCAAGGAC
CTGCCCGAAG CGCTCGCCAA CACGCTGGTC GTGGCGCAGC GCTGCGCGGT CATGCCGCCC
AAGCGCAAGC CGATCCTGCC CAGCCTTGCC GGCGACCAGG AAGGCGAGGC GCGGATGTGC
GCCGAGGATA GCCGCAAGGG CCTCGTCCTG CGACTTGAAC CCTATTACCC GGAAAGCACC
CACGCCGAAC TCGCTCGCGT GCTCTGCCTT GGCCCCGATG CCGAACCGGT CGCCGCCGAC
CATCCGCAAC TGGTCGAAGC GGGCGTCTGG GAAGAAGTTC TCGACTACCG CAAGCGGCTC
GAGTTCGAGA TCGCGATCAT CAACCGCATG GGGTTCGGCG GCTACTTCCT GATCGTTGCC
GACTTTATCA AGTGGGCGAA GGAACACGGC ATTCCGGTCG GGCCGGGCCG CGGTTCGGGC
GCGGGTTCGC TCGTCGCTTG GGCGCTTACC ATCACCGACC TCGATCCGAT CAAGCTTGGT
CTTCTGTTCG AACGCTTCCT GAATCCGGAA CGCGTCTCGA TGCCGGACTT CGACATCGAC
TTCTGCGAAA CCCGCCGTGG CGAGGTGATC CGCTACGTCC AGCGCAAGTA CGGCGAGGAC
CACGTCGCCC AGATCATCAC CTTCGGCAAG CTCAAGGCCC GCGCGGTGCT GCGCGACACC
GGCCGTATCC TTCAGATGAG CTATGGCCAG ACTGACCGGC TCTGCAAGAT GGTCCCGAAC
CATCCGACCG ATCCCTGGCC GCTGCCCCGC GCCCTCAATG GCGTGGCCGA ACTCAAGCGC
GAATACGACC GCGACCCCGA GGTCAAGCGC CTGATCGACC TTGCGATGCA GCTCGAAGGC
CTGCCGCGCA ACAGTTCGAC CCACGCGGCG GGCGTCGTTA TCGGCGACCG CCCGCTGGCG
CAACTCGTGC CGCTCTATCG CGATCCGCGT TCGGACATGC CGGTCACGCA GTTCGACATG
AAGCACGTCG AGGATGCCGG CCTCGTCAAG TTCGACTTCC TCGGCCTCAA GACGCTGTCG
GTCCTGCGCA AGGCCGTAGA CCTGATGAAG AAGCGCAGCA TCGAGATCGA CCTCTCGGCG
CTGCCGTGGG ACGACGAGCA AACCTACAAG CTGCTCCAGT CGGGCGACAC CGTCGGCGTT
TTCCAGCTCG AATCCGAAGG CATGCGGCGC ACGCTCGCCG CGGTGAAGCC CACCAACTTC
GGCGACATCA TCGCTCTCGT CTCGCTTTAC CGTCCGGGCC CGATGGACAA CATACCATTG
TTCGGCCGCC GCAAGAACGG GCTCGAAGCG ATCGAGTATC CGCACGACAA GCTGGCCGGG
ATCCTGTCGG AAACCTACGG CATCTTCGTC TACCAGGAAC AGGTCATGCA GGCCGCGCAG
ATCCTCGCCG GATACTCGCT CGGCGACGCC GACCTCCTGC GCCGCGCCAT GGGCAAGAAG
GTCCAGGCGG AAATGGACGC GCAGCGCCAG CGTTTCGTCG ACGGCTGCAA GGAAGTGTCC
GGCATTCCCG CCGCAAAGGC CAACGAACTT TTCGACTTGA TCGACAAGTT CGCGGGCTAC
GGCTTCAACA AGTCGCACGC AGCCGCCTAC GCGCTGCTCG CCTACCAGAC CGCCTGGCTC
AAGACGCACT ATCCGCACGA ATTCTATGCG GCGGCGATGT GCTTCGACAT GCACCAGTCG
GAAAAGCTCT CGGTCTTCGT CGACGACATG CGCCGCAACG GCGTGGCGCT GGCCGGGCCC
GATATCAACC ACTCCGAGGC CGAGTTCACC GTCGAGCGGA CGCACGACGG CTATGCCGTG
CGATATGCCC TCGCGGGCCT GCGCAACGTG GGCGAGAAGG CGATGGAGCA GATCGTCGAG
GAGCGTGAGG CCAACGGCCC GTTCGCTTCG CTGGACGATC TCTTCCGCCG CATCCCGGCG
GGTTCGATGA ACCGTCGCCA GCTCGAAGCG CTCGCGGCCG GTGGCGCGCT CGATTGCCTC
GAGCCCAACC GCGCGCAGAT CATCGCCAAT GCCGAACTGC TCATGGCCGT GGCCGAGGAG
GCCTCGCGCT CGCGCACTTC GGGGCAGGGC GGCCTTTTCG GCGGCGACGA TCACGCCACT
CCCGCCACCC GCCTCTCCGA CACGAAACCG TGGAGCCGCG CGGACCAGAT GGCGGCGGAG
CGCGAGAATT TCGGCTTCTA CTTTGCCGCG CACCCGGTCG AGGAATACCG CGCCGTCGCC
TCGGCCAATG GTGCGCGCTC CTATGGCAGC CTGATGACGA GCAGTGGGGA GCCGGGCGGA
CGCTCGGGCG CCGTCATGGC CGCGCTGGTG GAGAACGTGC AGAAGCGCAA GACGAAGAAG
GGCAAGGACT TCGTCATGGC CGACTTCTCC GACAGCTCCG GCCTGTTCTC GGCCTCCTGC
TTCGAGGAAA GCCTGGTCGA ACCGTTCCAG CAGTGGGCGA GGGAGGGGAC CTGCGTTCTC
CTCAACGTCG AACTCGACCG CCCCAATCCG GATGAGCCGC CGCGCGTCAC CGTGCGCGGC
GCCCGCCCGC TCGCCTCGGT CACCAGCGCC TCGCGCATGG TGCTCAAGCT CGATGTCAGC
AGGACGGAGG CGATTTCCGA CCTCGCGATG CTCTTGCCGC GGCGGCCTGA CGGCAAGGGC
GAGGTGCTTG CCCGCCTTCG TACCGGCGGG CCAAAGGAGC CTCTCGTGCG CCTCGGCAAT
GATTTCATAC TCGATAGTGA CTTAATCGAA CGATTGATTC CGATAGAAGG ACTCGCCAAT
GTGGCATTGA CCGCAAGACC GGAAAGGCAT CTGCGGTTGG TCGAATAG
|
|---|
| Protein sequence | MKKQAAPLAR ARPFSYLVHM PHAAFVPLRI FSSYTMLDGA IDPKAIAKTA AERGFPAAAI
TDRNGLYGSV AYAKACKDMG VQPVIGTMLA VARPERDGAA TGFGPAAPTI DWLALYAQDA
RGYDNLCHLV SRAHLDRPLE FAPHVVLADL VGHTDGLICL TAASEGALAQ LLAGGQQSAA
EAYVDRLLEL FPERLYIEIA RRNDAVEEAS ETALIDLAYA RDLPLVATNP ACFAERTFYD
AHDAMLCIAS STHVDSADRP RSSKEWWIKP AAVMEELFKD LPEALANTLV VAQRCAVMPP
KRKPILPSLA GDQEGEARMC AEDSRKGLVL RLEPYYPEST HAELARVLCL GPDAEPVAAD
HPQLVEAGVW EEVLDYRKRL EFEIAIINRM GFGGYFLIVA DFIKWAKEHG IPVGPGRGSG
AGSLVAWALT ITDLDPIKLG LLFERFLNPE RVSMPDFDID FCETRRGEVI RYVQRKYGED
HVAQIITFGK LKARAVLRDT GRILQMSYGQ TDRLCKMVPN HPTDPWPLPR ALNGVAELKR
EYDRDPEVKR LIDLAMQLEG LPRNSSTHAA GVVIGDRPLA QLVPLYRDPR SDMPVTQFDM
KHVEDAGLVK FDFLGLKTLS VLRKAVDLMK KRSIEIDLSA LPWDDEQTYK LLQSGDTVGV
FQLESEGMRR TLAAVKPTNF GDIIALVSLY RPGPMDNIPL FGRRKNGLEA IEYPHDKLAG
ILSETYGIFV YQEQVMQAAQ ILAGYSLGDA DLLRRAMGKK VQAEMDAQRQ RFVDGCKEVS
GIPAAKANEL FDLIDKFAGY GFNKSHAAAY ALLAYQTAWL KTHYPHEFYA AAMCFDMHQS
EKLSVFVDDM RRNGVALAGP DINHSEAEFT VERTHDGYAV RYALAGLRNV GEKAMEQIVE
EREANGPFAS LDDLFRRIPA GSMNRRQLEA LAAGGALDCL EPNRAQIIAN AELLMAVAEE
ASRSRTSGQG GLFGGDDHAT PATRLSDTKP WSRADQMAAE RENFGFYFAA HPVEEYRAVA
SANGARSYGS LMTSSGEPGG RSGAVMAALV ENVQKRKTKK GKDFVMADFS DSSGLFSASC
FEESLVEPFQ QWAREGTCVL LNVELDRPNP DEPPRVTVRG ARPLASVTSA SRMVLKLDVS
RTEAISDLAM LLPRRPDGKG EVLARLRTGG PKEPLVRLGN DFILDSDLIE RLIPIEGLAN
VALTARPERH LRLVE
|
|---|
| |