| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1673 |
|---|
| Symbol | |
|---|
| ID | 3918782 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 1754081 |
|---|
| End bp | 1755694 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640444414 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_496947 |
|---|
| Protein GI | 87199690 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0012513 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAACC GTTATGACGC ACTGATCATC GGCGGCGGCC ACAATGGCCT TGTCTGCGCC
TTCTACCTTG CCAAGGCAGG GATGAAGGTC CGCGTGCTGG AGCGCCGCGA CGTGGTCGGC
GGTGCTGCCG TGACCGAGGA GTTCCACCCC GGTTTCCGCA ATTCGACCGC CAGCTATACC
GTCAGCCTGC TGCGGCCCAA GGTGATCGCG GACATGAAGT TGCACGATTA CGGCTATCGC
GTGATCGAGC GGACGATCAG CAATTTCTTC CCGTTCCCCG ACACCTACCT CAAGTTGGGC
GGCGGACCGG GCCGTACCGA GGCAGAGTTC GCGCGCTTCT CGAAGAAGGA CGCGGAAAGC
TATCCCAGGT ATGACGCCGC GCTGGAAAAG GTCGCGAACG TCCTGCGCGA CATTTCCCTG
CAGACGCCGC CCAACGTCGG GGGCGGCATT GCCGCGCTGA AGTCCGCCGC GACGCAGGGC
TGGCCGATTG CGAAGCTGGA TATCGCCACC CAGCGCGACT TGCTCGACAT CTTCACCAAG
TCCGCGCGCG ATTTCCTCGA TGGCTGGTTC GAGGATGACC ACGTCAAGTC CGCCTTCGGG
TTCGACGCGG TGGTCGGCAA CTTCGCCGGC GTATCCACGC CCGGCTCTGC CTACGTCCTG
CTGCACCACG TGTTTGGCGA AGTGAACGGC AAGCTGGGCG CATGGGGCCA CTCCGTCGGC
GGCATGGGGG CGATCACCCA GGCCATGGCG AAGGCCTGTG TCGATGCTGG CGTGGAGATC
AGCCTCGAAG CGCCCGTTTC GCGCGTGCTC GTGAACAACG GCAAGGCCGC TGGCGTGAAG
CTGGAGGGCG GCGAAGAGCT TTACGCCCCG ATCGTTGCTG CCAACGTCGG CCCTGCCATG
CTCTATCGCC AGATGGTCGA TGCCAGCGAC CTTGACGAGG ATTTCCGCCG GCGGATGAAG
AACTACAAGA CCGGCTCAGG CACGTTCCGC ATGAACGTGG CGCTTTCCGA ACTGCCGGAT
TTCAAGGTGC TTCCCGGCAA GCAGCTTGCA GAACACCACA CTGCCGGCAT CATCATCGCG
CCCGGCATGG ATTACATGGA CCAGGCCTTC ATCGATGCGC AGCAGTTCGG CTGGTCGAAG
AAGCCCATCG TCGAGATCAA GATCCCCAGC ACCGTCGACG ACAGCCTTGC CCCTCCGGGG
CAGCACGTGG CGAGCCTGTT CTGCCAGCAG TTCGCGCCCC AATTGCCCGA TGGCCGGTCA
TGGGACGATT GCCGCGAGGA AGTGGCGGAT CTCATCATCG ACACCGTCAA CGACCATGCA
CCCAACTTCA AGGCCAGCGT GATCGCCCGT CAGATCCACT CGCCGCTCGA TCTGGAGCGC
AAGTTCGGCC TGATCGGCGG AGACATCTTC CACGGTACCA TGGGCCTCGA TCAGCTCTGG
GCCGCGCGGC CGGTGCTGGG CAACGGCGAC TATCGCTCGC CGATCAAGGG GCTCTACATG
TGCGGCTCGG GCACGCATCC CGGCGGCGGC GTGACCGGCG CGCCGGGGCA CAATGCGGCG
CATGAGATCA TCCGGGATCG TTCGCTGTTG TGGAAGCTGC TCCATCGCGC CTGA
|
|---|
| Protein sequence | MSNRYDALII GGGHNGLVCA FYLAKAGMKV RVLERRDVVG GAAVTEEFHP GFRNSTASYT
VSLLRPKVIA DMKLHDYGYR VIERTISNFF PFPDTYLKLG GGPGRTEAEF ARFSKKDAES
YPRYDAALEK VANVLRDISL QTPPNVGGGI AALKSAATQG WPIAKLDIAT QRDLLDIFTK
SARDFLDGWF EDDHVKSAFG FDAVVGNFAG VSTPGSAYVL LHHVFGEVNG KLGAWGHSVG
GMGAITQAMA KACVDAGVEI SLEAPVSRVL VNNGKAAGVK LEGGEELYAP IVAANVGPAM
LYRQMVDASD LDEDFRRRMK NYKTGSGTFR MNVALSELPD FKVLPGKQLA EHHTAGIIIA
PGMDYMDQAF IDAQQFGWSK KPIVEIKIPS TVDDSLAPPG QHVASLFCQQ FAPQLPDGRS
WDDCREEVAD LIIDTVNDHA PNFKASVIAR QIHSPLDLER KFGLIGGDIF HGTMGLDQLW
AARPVLGNGD YRSPIKGLYM CGSGTHPGGG VTGAPGHNAA HEIIRDRSLL WKLLHRA
|
|---|
| |