| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1421 |
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| Symbol | |
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| ID | 3916085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | + |
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| Start bp | 1462057 |
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| End bp | 1464231 |
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| Gene Length | 2175 bp |
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| Protein Length | 724 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640444164 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_496699 |
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| Protein GI | 87199442 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.402676 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTGTCA GGGGATTGTT CAGGAGCCTT GGGCGCGGCG GAGCCGCAGA CGCGGACGGC
GGCGAATGTG CCGTCGCAGC CGATGCGGGT GCGCCCGAGG AATCTTCTGC GCAGGTTGAT
CCTGCATCTC GGCTAGCCGT TCTCGACGCG TTCGAGCAGG CTGGGTTCGG CTGGCTTTGG
GCGACCGACG CCGAAGGGCG CCTGACCTAC GTTTCCCTGT CCGCTCATAC CAAGGCAGCC
GGCATGATCG GGCGGCCAAT CGCGACCCTG ATAGAAACAG ACCGCGACGG CCCCGGCGAA
AGCGCCGGCA GGCCGTTGAG CTTCCAGCTG TCGAAGCGGG GACGCATAAA CGATCTTGTC
GTCCGATTTT CCGGGGACGA GCGCGACGGC AGGTGGTGGT CTCTTTCCGG GCAGCCCAGC
GTTTCGCCGG ATGGCAGCTT TGCCGGCTAT CGCGGTTTCG CGCGTGACGT GACGCAGGAA
TACACCCGCA AGCGCGAGGA TTCGCGGGCG GCAGAATTCG ATTCGCTTAC CGGGCTCTAC
AACCGGCACA GGATGACGCG CAGGCTGGAT GCGATCCTGG CCGCGTTCCG CCAGGCCAAC
AGGTGCTGCG GCCTGATGAT GCTCGATCTG GACAAGTTCA AGCACGTCAA CGACACGATG
GGCCATCCTG CCGGTGACGA ACTGCTTCGG CAGGTCGCCG AGCGCCTGCG CAAGGTCGTG
GGCGAGCGGG GCGAGATCGG CCGGCTGGGC GGCGACGAGT TCCAGATCAT CCTGCCTGAC
ATCGACGACC GGGGCCGACT TGGCGAACTC GCCGCCAAGG TCATCCAGAT TGTGTCGCAG
CCATACGCCA TCGAAGGCAA GCGTGCGGTG ATCGGCACTT CCGTCGGCAT CGCGGTGGCG
CCGCATGACG GGGAGGACCG CGAGGGTCTC GTTTCTTCCG CCGACCTTGC GCTTTATGCC
GCGAAGCACG GCGGACGCGG GCAGTTCCGT TTCTTCTCGA CCGAGTTGAA GGACGAGGCC
CAGGAGCGCA CGATCCTCAA TCAGGACCTG CGCGAGGCGT TGGCCCGCGA CGAACTGGAA
CTGCACTACC AGCCGGTGGT GCGGATCGAG GACAACATCG TCGTCGGCTT CGAGGCGCTG
ATGCGCTGGA ACCATACGGA GCGCGGGCCA ATCCCGCCCT CGCTGTTCAT TCCGATCGCC
GAGGAGAGCA ATCTCATCGT GCCATTGGGC GAATGGGCCC TGCGCAAGGC CTGCGAGGAT
GCTGCCGCCT GGCCCGACAG CGTGCGGGTG GCGGTCAACG TCTCGCCCGT CCAGTTCGGC
GTTGCGGGCT TCGTGACCTC GGTTGCAACT GCCGTGGCAC AGAGCGGGAT CGACCCCGAA
AGGCTGGAGC TTGAGCTGAC CGAGACGGTG TTCATGCGCG ACAGCGAAGC GGTCGAAGAA
ACGTTCTCTG CGCTCAAGGC GCTTGGCGTG CGATTGGCGC TCGACGATTT CGGGACCGGG
TATTCCTCGC TCAGTTATTT GCGCTCGGCG CCCTTCGACA AGCTCAAGGT CGATCGCAGC
TTTGTCGAGA CGTGTGCCGC CAAGGACCAG AACAGCGCGA AGATCATATC GGCCGTCCTC
GGGCTGGCCG ACGCGCTGGG CATGGAGACG ACCGTGGAAG GCGTCGAGGC ATTCGACCAG
CTCGAAGTGG TGCGAGAGCG TGGAGCCAAG CTGGTGCAGG GACATATCTT TGCCCATGCG
ATGCCCCATG CCGAAGTGGC CGAGCGGCTT GCGGACAGCA ATTTGCGCAT CGAGCCCAAC
GGCCCCATGC GGCATCGGCC CGAGCGACGC GCGGTGTTCC GCCGCGTGGT GGTGGTCCAC
GAGGATCATC GCTACGAGGC TGTCATGCGC GACCTTTCCC GGACGGGCGC ACGGATCGAC
GGCTTGCTGG GGGTGCCGGT GGGCACGAGC CTGGTGATCG ACCTCGGCGG AGGGCAACTG
GTCGTGTCTA TGGTCGTGCG GTCGGACGAG GCCGTTATCG GCGTCGAGTT CGAGACTCCC
CTGACCAGCG ACGGAGCGGG TGGCTTGTGC ACCCGCCACC GCGTGCCGCC GTCGACACTG
GCTGCCGCGA CGGCGACCGC GGCGCCGCAA AGCAAGCCGC GCTTCATCCA GGTTGCGGTT
CCCGGGTCGC GTTGA
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| Protein sequence | MVVRGLFRSL GRGGAADADG GECAVAADAG APEESSAQVD PASRLAVLDA FEQAGFGWLW
ATDAEGRLTY VSLSAHTKAA GMIGRPIATL IETDRDGPGE SAGRPLSFQL SKRGRINDLV
VRFSGDERDG RWWSLSGQPS VSPDGSFAGY RGFARDVTQE YTRKREDSRA AEFDSLTGLY
NRHRMTRRLD AILAAFRQAN RCCGLMMLDL DKFKHVNDTM GHPAGDELLR QVAERLRKVV
GERGEIGRLG GDEFQIILPD IDDRGRLGEL AAKVIQIVSQ PYAIEGKRAV IGTSVGIAVA
PHDGEDREGL VSSADLALYA AKHGGRGQFR FFSTELKDEA QERTILNQDL REALARDELE
LHYQPVVRIE DNIVVGFEAL MRWNHTERGP IPPSLFIPIA EESNLIVPLG EWALRKACED
AAAWPDSVRV AVNVSPVQFG VAGFVTSVAT AVAQSGIDPE RLELELTETV FMRDSEAVEE
TFSALKALGV RLALDDFGTG YSSLSYLRSA PFDKLKVDRS FVETCAAKDQ NSAKIISAVL
GLADALGMET TVEGVEAFDQ LEVVRERGAK LVQGHIFAHA MPHAEVAERL ADSNLRIEPN
GPMRHRPERR AVFRRVVVVH EDHRYEAVMR DLSRTGARID GLLGVPVGTS LVIDLGGGQL
VVSMVVRSDE AVIGVEFETP LTSDGAGGLC TRHRVPPSTL AAATATAAPQ SKPRFIQVAV
PGSR
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