Gene Saro_0875 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_0875 
Symbol 
ID3917960 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand
Start bp930813 
End bp931592 
Gene Length780 bp 
Protein Length259 aa 
Translation table11 
GC content67% 
IMG OID640443608 
Productshort chain dehydrogenase 
Protein accessionYP_496154 
Protein GI87198897 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.0875261 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCAGGG TTCAGGGCAA GAAGGCACTC GTCACCGGGG CGGCGCAAGG CCTCGGCGCG 
GCACACGCAT GGATGCTGGC GCGCGAAGGC GCCAGGGTGC TGCTCACCGA CATCAACGGC
GAAGGCGCAA CGGCAACGGC TGCGGCAATC AACGCCGAAC TGGGGGCAGG CACGGCTTTC
GCCATGCGCC ATGACGTGAC CAGCGCGGAC GATTGGGACG CGGCAATCGC GTTCGCCGCC
GAGAAGCTCG GCGGGCTTTC GGTCCTGGTC AACAACGCGG GCGTCGGCGT GCGCGGCAAT
ATCGAGACCT GCACGCTGGA AGAATGGCAC CGGGGCTTTG CCATCAACGT CGACAGCGTG
TTCCTGGGTT GCCAGAAGGC GCTGCCGCTG CTGCGCGACA GCCAGCCCGC CTCGATCGTC
AACATCAGCT CGATCGCGGG TCTCATCGCC TCGGACACGA TGCCCGGCTA CAACGCCAGC
AAGGCGGCGG TGTGGATGCT GACCAAGTCG GTCGCGCTGT ACTGCGCCAA GCGCGGCTGG
GACATCCGCT GCAACTCGGT CCACCCGACG TTCGTCGACA CCCCGATCCT CGACGGCATC
AGCGCGAACG CCAATCTGGA AAAGTCGGTG GTCATGGGCA AGCTCGCCCG CCAGATCCCG
CTGGGCCGCG TGGGCGAACC CGACGACATT GCGGCGGGCG TGCTCTACCT CGCCAGCGAC
GAAAGCCGCT TCATGACCGG CGCGGAGCTG AAGCTGGATG GCGGCATCTC GGCGATGTGA
 
Protein sequence
MGRVQGKKAL VTGAAQGLGA AHAWMLAREG ARVLLTDING EGATATAAAI NAELGAGTAF 
AMRHDVTSAD DWDAAIAFAA EKLGGLSVLV NNAGVGVRGN IETCTLEEWH RGFAINVDSV
FLGCQKALPL LRDSQPASIV NISSIAGLIA SDTMPGYNAS KAAVWMLTKS VALYCAKRGW
DIRCNSVHPT FVDTPILDGI SANANLEKSV VMGKLARQIP LGRVGEPDDI AAGVLYLASD
ESRFMTGAEL KLDGGISAM