Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_0318 |
Symbol | |
ID | 3915560 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | - |
Start bp | 342540 |
End bp | 343523 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640443047 |
Product | type II secretion system protein E |
Protein accession | YP_495600 |
Protein GI | 87198343 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | [TIGR02782] P-type conjugative transfer ATPase TrbB |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.0504933 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGTCA TTCCGATCCG GTCCGAGGCA GCAACGCGCG GTGCGCGCAT GCTCCGCACG GCGCTCGGGC CCGAGATCGG GGCCTGGCTG GAAGATCAGG CGGTCATCGA AGTCATGCTC AATCCTGACG GACGGCTCTG GGTCGACCGG CTCGGGCTTG GGATTGCCGA TACGGGCGCG GTGCTGTCCG CCGCCGATGG CGAGCGGATC ATCCGCCTTG TCGCGCATCA TGTGGGCGCC GAGGTGCACT CAGGCGCGCC GCGGGTCTCG GCGGAATTGC CCGGGACGGG GGAGCGATTC GAGGGGCTGT TGCCGCCGGT GGTGGCAGCG CCCAGCTTCG CGATCCGCAA GCCGGCCGGC GCGGTGTTCA CACTGGCAGA CTATGTCGCG GCCGGGATCA TGCCGGCGGC ATCCGCCGAT GCTCTTGCTG CCGCGGTCGC GGCGCGGGCC AATATCCTCG TCGCGGGCGG GACGTCGACC GGCAAGACGA CGCTGACCAA TGCTCTCCTC GCCGAGGTCG CCCGGACCGG CGACCGGGTG GTGCTGATCG AGGATACGCG CGAGCTGCAA TGTGCCGCGC CCAATCTGGT GGCGCTGCGC ACCAAGGATG GCGTGGCCTC GCTTGCCGAT CTGGTGCGTT CGGCCCTGCG CCTGCGCCCT GACCGGATCC CCATCGGCGA GGTACGCGGC GCCGAGGCGC TCGATCTCCT CAAGGCCTGG GGCACCGGGC ATCCCGGCGG GGTCGGAACG ATCCATGCAG GCTCTGCGCT CGGCACGCTG CGGCGGCTCG AGCAGCTGAT CCAGGAAAGC GTGGTCACGG TGCCGCGCGC CCTCATTGCC GAGACGATTG ATGTCATCGC CGTGCTCGTC CGCGACGGCA CCGGTCGGCG CCTGTCCGAG CTGGTCCGCA TCGAAGGCCT CGATGCCGCC GGTGACTACC GCCTCGTCCC CCTTGTCCCT GCAACCGAAG GAGAATGCCC GTGA
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Protein sequence | MSVIPIRSEA ATRGARMLRT ALGPEIGAWL EDQAVIEVML NPDGRLWVDR LGLGIADTGA VLSAADGERI IRLVAHHVGA EVHSGAPRVS AELPGTGERF EGLLPPVVAA PSFAIRKPAG AVFTLADYVA AGIMPAASAD ALAAAVAARA NILVAGGTST GKTTLTNALL AEVARTGDRV VLIEDTRELQ CAAPNLVALR TKDGVASLAD LVRSALRLRP DRIPIGEVRG AEALDLLKAW GTGHPGGVGT IHAGSALGTL RRLEQLIQES VVTVPRALIA ETIDVIAVLV RDGTGRRLSE LVRIEGLDAA GDYRLVPLVP ATEGECP
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