| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0036 |
|---|
| Symbol | |
|---|
| ID | 3916039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 37528 |
|---|
| End bp | 39198 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640442761 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_495319 |
|---|
| Protein GI | 87198062 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.526737 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCGAAAG CGCGCCCATC CCCGCAGGCT GCCGCGCTGG ACCGCGAGAT CTACCGCATC
CTGTTCGAGA ACATGGACGA TGGCTTCTGC GTCATCGAGT TTCTCGACGG GCCGCATGGT
CCGCTCAGCG ATTACGTCCA CGTCCTCGCC AACTCCGCCT ATGAACGCAA CACCGGCATT
CCCAACGTCG TCGGCCAGTA CCTGCGCGAG ATGGTGCCCG ACGAGGCTGA CGACTGGATC
GCGTTCTACG GCAAGGTCCT GCGCACCGGA GAACCGATCC GCTTCCGCAA CGAACTGGTC
GTCACCGGCC GCCATCTCGA AGTCTCGGCC TTCCGCCTCG GAACCTTCGA GGACCGGTTG
GTGGCAGTCC TTTTCAAGGA CGTCACGGAA CGGGTCGACG CCGAAAGCGC TCTGCACCAG
CTGAACGAAA CCCTCGAGCA GCGCGTCGCC GATGCGCTGG CGCAGCGGGA GCTGGCCGAA
AGCGCGTTGA GGCAGGCGCA GAAGATGGAA GCGGTCGGCC AGTTGACCGG CGGCCTTGCG
CACGATTTCA ACAATCTCCT CGCCGGGATC ACCGGGGCGT TCGAGATGAT CGCGCGACGA
CTGGAGCAGG GCCGCACCGC CGATGTAGAG CGTTATCTTG CGGCGGGCCT CGGAGCGGCC
CACCGCGCGG CCGCGCTCAC GCACCGCCTG CTTGCCTTCT CACGCCGCCA GACGCTGTCC
CCCCGCACGA CCGAGGCGAA CCGCCTGCTG GTCGATTTCG CCGAACTGGT GCGGCGCACG
GTCGGCCCGC AGATCGCGGT CGAGGTGCGC ACCAACCCCG CGCTATGGGC CGCGCTGGTC
GATGCAAACC AGCTCGAGAA CGCGCTGCTG AACCTGTGCA TCAATGCTCG CGACGCCATG
CCGGACGGCG GTCGACTTGC CATCGAAACC GATAACGTCA CCCTCGACGA AGCCAGCGCT
ACCGAGCGGG GCCTTCCGCC AGGCGACTAC GTGACGATAA CCGTGAGCGA CACCGGCGTC
GGCATTCCGG AAGAGGATCT CGACCGCGTG TTCGAGCCGT TCTTCACCAC CAAGCCGACC
GGGCGCGGAA CGGGCTTGGG GTTGTCGATG GTCTACGGCT TTGCCCGGCA GAGCGATGGT
ATCGTGCGCA TCCGCTCCCG CCCCGGCGAA GGCACGCAGG TCCGCATCTA CCTTCCGCGC
CACGAGGGCC CGGCCGAAGT CCCTCGCGAA ACCGGCGTTC ACGAACCGCA GCCCGAATTG
CCTGGCGCGA CGGTCCTCGT CGTCGACGAC GAGCCGACGG TGCGCATGAT GATGGTCGAT
GCGCTCGACC TGATCGGTGT CGAATGCCTC GAGGCGCACG ACGGGCCCGC CGCGCTCGCG
ATGCTCGAAC GCCACCCGGG GATCGACCTG CTCGTCACCG ACGTCGGGCT TCCCGGCGGC
CTCAACGGCC GCCAGGTGGC CGACGAGGCG CGGCGGCGGC GGTCGGACCT GGGAGTCCTC
TTCGTCACCG GCTATGCCGA CAGCGTAATC CTCCAGCGCG ACACCATGGA ACCGGGCATC
GACATCCTGA CCAAGCCGTT CACCATCGAG GACCTGCAAT CGCGCGTCGC AGTGCTGCTT
TGCGCGCGTG GGGGGCCAGG CAGGCCTGAA ACCGGACCGA ACGCCGCCTA G
|
|---|
| Protein sequence | MAKARPSPQA AALDREIYRI LFENMDDGFC VIEFLDGPHG PLSDYVHVLA NSAYERNTGI
PNVVGQYLRE MVPDEADDWI AFYGKVLRTG EPIRFRNELV VTGRHLEVSA FRLGTFEDRL
VAVLFKDVTE RVDAESALHQ LNETLEQRVA DALAQRELAE SALRQAQKME AVGQLTGGLA
HDFNNLLAGI TGAFEMIARR LEQGRTADVE RYLAAGLGAA HRAAALTHRL LAFSRRQTLS
PRTTEANRLL VDFAELVRRT VGPQIAVEVR TNPALWAALV DANQLENALL NLCINARDAM
PDGGRLAIET DNVTLDEASA TERGLPPGDY VTITVSDTGV GIPEEDLDRV FEPFFTTKPT
GRGTGLGLSM VYGFARQSDG IVRIRSRPGE GTQVRIYLPR HEGPAEVPRE TGVHEPQPEL
PGATVLVVDD EPTVRMMMVD ALDLIGVECL EAHDGPAALA MLERHPGIDL LVTDVGLPGG
LNGRQVADEA RRRRSDLGVL FVTGYADSVI LQRDTMEPGI DILTKPFTIE DLQSRVAVLL
CARGGPGRPE TGPNAA
|
|---|
| |