| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_5108 |
|---|
| Symbol | |
|---|
| ID | 5708082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 5783902 |
|---|
| End bp | 5784918 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641274500 |
|---|
| Product | 60 kDa inner membrane insertion protein |
|---|
| Protein accession | YP_001539841 |
|---|
| Protein GI | 159040588 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.3246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000218761 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | TTGAGTCTCG ACTGGATCTA CTACGCGATC TCGTGGATCC TGCTGCTCTG GCATCAGGCG
TGGGACGCCA TCGGAGTGCC GGACGGCGCG GTGCTCGGCA CCAACTGGGC CTGGATTCTC
GCGATCATCT TCCTGGTGGT CACCGTCCGG GTGATCCTCT TCCCGGTCTT CGTCAAGCAG
ATCAAGTCGC AGCGGGCGAT GCAGGCGCTG CAACCGCAGG TCAAGGCGTT GCAGGAGAAG
CACAAGGGTG ACCGGGAAAC GCTCCAGAAG GAGATGATGG AGCTATACCG GAAGGAAAAG
GCCAACCCGC TCATGGGCTG CCTTCCGATG TTCCTCCAGA TCCCGGTCTT CCTCGGCCTG
TTCCACGTGC TCCGCCGGCT CAACCCAGAC AAGCCACTGG ATAAGAAGAC GCTCTACGGC
TGGACGGTCG ACCAGTTCGA CAGCGCGTCA GTCGCCAAGC TGTTCACCGC GCCGATCGCC
GGCAAGTTCG GCTCCTCCGC CGAGGAACTG GCCCGGCTGG GGGCCGACGG CACCACAGTC
AAGATCATGG CCGGCATTCT GGTGCTGGTG ATGATGGGCA CCACCTACCT GACCAGCCGC
CAGATGATTC TCAAGACCGG CTGGGCCGAG GACCCGCAGC AGCGGATGAT CCAGCGGTTG
ATGCTCTACG GCATCCCGGC GTCGCTGCTC ATCTCCGGCG CGATCTTCCC GATCGGTGTG
ATCATCTACT GGGTCACCAA CAACATGTTC ACCCTGGCCC AGCAGCAGTG GGTGCTGCGC
AAGTTCCCGC CACCGCCGAA CGTGACGAAG TCCGGCACCA CCACCAGCGC GCGTGGTGCG
GCGCAGCCGG CGAAGAGCGG TGGCCTCTTC GGCCGCGGCA AGACCACTCC CCCGGCCGCC
ACCAAGCCGG CCGCGCCCAA GGTCGCCGGC CCGAAGCCGG GCGCCAAGCC CACCAACCCG
AAGAAGGGCC AGTCCGCCAG CCCGAAGAAG AGCCGCCCCG CCAAGCGACA GGGCTGA
|
|---|
| Protein sequence | MSLDWIYYAI SWILLLWHQA WDAIGVPDGA VLGTNWAWIL AIIFLVVTVR VILFPVFVKQ
IKSQRAMQAL QPQVKALQEK HKGDRETLQK EMMELYRKEK ANPLMGCLPM FLQIPVFLGL
FHVLRRLNPD KPLDKKTLYG WTVDQFDSAS VAKLFTAPIA GKFGSSAEEL ARLGADGTTV
KIMAGILVLV MMGTTYLTSR QMILKTGWAE DPQQRMIQRL MLYGIPASLL ISGAIFPIGV
IIYWVTNNMF TLAQQQWVLR KFPPPPNVTK SGTTTSARGA AQPAKSGGLF GRGKTTPPAA
TKPAAPKVAG PKPGAKPTNP KKGQSASPKK SRPAKRQG
|
|---|
| |