| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4750 |
|---|
| Symbol | |
|---|
| ID | 5705341 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 5375056 |
|---|
| End bp | 5376513 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 641274148 |
|---|
| Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
|---|
| Protein accession | YP_001539494 |
|---|
| Protein GI | 159040241 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
|---|
| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000166477 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGCCG GCTCGACGTC GCCCAACCGG AGCCGACGCT GGCTGCTGCC GGCCGTGCTG
GCCTCGGTGG TGGTCCTAGC GCTGGCCGCC GTCGGGGTCG CCGTGGCGCA GCCGGGCCCG
GTGGCGCAGT GGCGCGACGG CGGTGCCGGC GAGCAGTCCG CGGCCGAGCC GGCGCCGGCG
GCGGTCCTGG CCACCGCCGA CACGAACGCG CCCGAGCCCA CCGCCGGGGG CGTGCGTGCC
GCGCTCGACC CACTGGTCTC CGCCAGGGCG TTGGGCGACC GGGTCAACGT CTCGGTGACC
GACGTCGTCA CCGGGGCGAC CTTGTATGGC CGGGGCGCCG ACGACGGCAC CGTACCCGCG
TCGGTGACCA AGCTGGTCAC CGGTGCGACC GTGCTCGCCG CGCGCGGCCC GGGGCACCGG
ATTCCCACTC GGGCGGTCGC CGGGGCCACC CCCGGTGAGG TCGTGCTCGT CGGCGGCGGC
GACCCGACCC TCGCCGTGGA CCGCAACGGG TTCTACCCGG GTGCGGCGCG GCTCGACGAC
CTGGCCGAGC AGGTGAAGAC CGCCCTTGGC GGCACCGCGC CCACGCGGGT CGTGGTCGAC
TCGTCGCTGT ACACCGGGCC GGTGCACGCG CCCAAGTGGG ACGACGACAT TCCGTCCGGC
GGGTACGGCG CGGCGATCAC CGCGTTGATG ACTGACGGTG CCCGTAGCAA CCCGGAGAAA
GCGAAACGGG ACCACGACGA CGGCTCCCAC GCCGCCGAAC GGGTGGAGGA GCCGGACCTC
CACGCCGGCC GGGCGTTCGC GCAGCTGCTG GGCGTACCGA CGGACGCGGT CGAACTGGGC
GCGGCGCCCG AGGTCGGGCC GGACGCGACG GCCGGCGCGT CCGGCGGCGA ACTGGGCGTG
GTCCAGTCGC TGCCGATGGT GCGACTGGTC GACATCATGA TCAGTGACAG CGACAACGTG
GTGGCCGAGG CCCTGGCCCG GCAGGTGGCC CTGGCCCGGG GGCAGCCGGC GTCGTTCGCC
GGCGCCGGAG AGTCGATGGA GGCGGTCGCG GGTGAGCTGG GGCTGCCGGT CGACGGGCTC
ACGTTCGCCG ACGGCAGCGG CCTGTCCCGC GCCAACCGGA TCAGCCCGTC GCTCCTCACC
GAACTGATCG CGCTGGCCGG CGACGGTAGC CGACCGGAAC TGGCGACGAT CTTCGGTGGC
CTGCCGGTCG CCGCCTGGTC GGGCACCCTC GTCGACAGGT ACACCGACGC CGCAGCGAAG
GCCGGTGCCG GCATGGTCCG GGCCAAGACC GGCACGTTGA CCGGCGTGCA CGCGATCGCG
GGGGTGGTGA CCACCGCCGA CGGCCGACTC CTCGGCTTCG CGGTGCTCAC CGACAAGGCG
CCCGCGGACG GACTGGAGAA GGCCCGGGTG GCGCTGGACC GGATCGCCGC CGCCCTCGCC
GCCTGCGGCT GCCGCTGA
|
|---|
| Protein sequence | MPAGSTSPNR SRRWLLPAVL ASVVVLALAA VGVAVAQPGP VAQWRDGGAG EQSAAEPAPA
AVLATADTNA PEPTAGGVRA ALDPLVSARA LGDRVNVSVT DVVTGATLYG RGADDGTVPA
SVTKLVTGAT VLAARGPGHR IPTRAVAGAT PGEVVLVGGG DPTLAVDRNG FYPGAARLDD
LAEQVKTALG GTAPTRVVVD SSLYTGPVHA PKWDDDIPSG GYGAAITALM TDGARSNPEK
AKRDHDDGSH AAERVEEPDL HAGRAFAQLL GVPTDAVELG AAPEVGPDAT AGASGGELGV
VQSLPMVRLV DIMISDSDNV VAEALARQVA LARGQPASFA GAGESMEAVA GELGLPVDGL
TFADGSGLSR ANRISPSLLT ELIALAGDGS RPELATIFGG LPVAAWSGTL VDRYTDAAAK
AGAGMVRAKT GTLTGVHAIA GVVTTADGRL LGFAVLTDKA PADGLEKARV ALDRIAAALA
ACGCR
|
|---|
| |