| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_4374 |
|---|
| Symbol | |
|---|
| ID | 5705065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4940912 |
|---|
| End bp | 4942291 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641273796 |
|---|
| Product | polymorphic outer membrane protein |
|---|
| Protein accession | YP_001539146 |
|---|
| Protein GI | 159039893 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01376] Chlamydial polymorphic outer membrane protein repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000585185 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCATC AGCACCACAC TCACGAATCC AGAACGGATG GTCCCTGCGG GGGGCGGGCG
AGGTCACGAT GGTGGGCGGT CGGATTGGCC GGGATGACCG GCTTGGCCCT CACCGCCACT
GTCGCCGTCG CCACCCCTGT CGCTGACGCT GTCGGACGGG CCACCGTCGC CGACGACCGG
CTTGGGAAGC CCGACCGGCC ACAGGGGGGT GATCACCGTG ACGAAGGTAA GGGGGAGGAC
GCAAGCCACG TCAAGAAGCC AACGGGCACA CCTGTCCCCT GCAGCACGGG CCGGCTGATC
GCCGCGATCA CCCTGGCCAA CGCCCGCGGC GGTGCCGTGC TCGACCTCGC CAAGAAGTGC
ACCTACCTGC TCACCGCCGA CATCGACGGC GCCGGTCTAC CCGCGATCAC CACCCCCATC
ACTCTCAACG GCGGCAAACA CACCACCATC AAACGCGCCG CGGCGGCCGA CGACTTCAGA
ATCCTGACCG TGAACGCCAA CGGTCGACTC ACCCTCAATC ATCTCACCAT CACCGGCGGC
AGGCTTTCCG GCGACAATGA CGGCGGCGGG ATTCTTATCA ATTCGGGTGG CGGTGCCACT
GTCGACACCA GTAAAATCGT CGCAAACGTC TCGGTTGACG GCGATGCTGG TGCGATCATG
AATAATGGCG GTGTGCTCGA CATCAGGCAT TCCATCATCA GTCGCAATAC GGCCGCCAAT
ATCGGCGGCG CGATCTTCAG TATTGGTCAA CTCGTCGTCG ACAAGTCACG GTTCGATGCC
AACGCTGCCC TGACTGGCGG TGCCATCACC ATCAGTGGCG ACGTCACCAT AACCCGGAGC
GAGTTGGTCG ACCATCAGGC TGCCGACGGT GGCGCCGTCT TCTTCCTCGG CGGGTCGACC
GGCAAGATCA CCGATACGCG TTTCGCGCGA AACACGGCGA CGAACACCGG CGGATCCGCC
ATCGGCGGGG GCCCTACACA GCTCACCATG TCCCGGGTCA CCCTCGCCAA CAACACCACA
ACCGGTGCCG GCGGGGGCGC ACTGTTTCTA CAAGGCGGAA GCGCGCTCGT GGAGGACAGT
GTCATCAAGA ACAATGTCGG AACAAACGGC GGTGGCATTC GTAATCTTGG CGGGTTGACG
CTGCTCCGCA CACAGGTCAC CGGCAACCAG GCCACCGAGT CGGGCGGCGG AATCCTCAAC
GAGGCAAACG GCGTGCTCGC GCTGCTCAGC ACGAAGGTGG TCAAGAACGT CGCCGGCACC
GACGGCGGCG GCATCTTCAA CGCGGTGGGT GGCACGGTCG ACCTGAACAC CGCCACCGGC
ACCATCGTGG CCAAGAACCG ACCGAACAAC TGCACGAACG TTCCGGACTG CCCGGACTGA
|
|---|
| Protein sequence | MKHQHHTHES RTDGPCGGRA RSRWWAVGLA GMTGLALTAT VAVATPVADA VGRATVADDR
LGKPDRPQGG DHRDEGKGED ASHVKKPTGT PVPCSTGRLI AAITLANARG GAVLDLAKKC
TYLLTADIDG AGLPAITTPI TLNGGKHTTI KRAAAADDFR ILTVNANGRL TLNHLTITGG
RLSGDNDGGG ILINSGGGAT VDTSKIVANV SVDGDAGAIM NNGGVLDIRH SIISRNTAAN
IGGAIFSIGQ LVVDKSRFDA NAALTGGAIT ISGDVTITRS ELVDHQAADG GAVFFLGGST
GKITDTRFAR NTATNTGGSA IGGGPTQLTM SRVTLANNTT TGAGGGALFL QGGSALVEDS
VIKNNVGTNG GGIRNLGGLT LLRTQVTGNQ ATESGGGILN EANGVLALLS TKVVKNVAGT
DGGGIFNAVG GTVDLNTATG TIVAKNRPNN CTNVPDCPD
|
|---|
| |