| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3455 |
|---|
| Symbol | |
|---|
| ID | 5708204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 3982755 |
|---|
| End bp | 3984221 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641272882 |
|---|
| Product | putative monovalent cation/H+ antiporter subunit D |
|---|
| Protein accession | YP_001538248 |
|---|
| Protein GI | 159038995 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.112327 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0281996 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCATCC TGCTGATGAT TCCGGTGGCA GTTCCGCTGT TTGCCGCCGC CGTGCTGCTC
GCCCTGCCCG ATCGGCCGGG GATGCGGCGG GTGGTGGCGC TGCTCGCCAC GGCGGCGGTC
ACCGCGGTCG GCGTCGCCCT GCTGGTGCTG ACTCGGGATG GGGACGTCCC GGTGCTCCGG
GTCGGCGGCT GGCCGCCGGT CGTCGCGATC ACCCTGGCGG CCGATCCGCT GAGCGCGCTG
CTGGTCACGG TGTCGGCGAC CGTGGTGCTG GCCTGCCTCG TGGCCGCGGC CGGAACCGGT
GAGGACAGCC AGCGGGCCTT TCTGCCGCTG ACGATGGTGC TGTCGGCCGG CGCGTACGGT
GCCTTCCTCA CCACCGACCT GTTCAACCTG TTCGTGCTGG TCGAGGTCAT GCTCGTTCCG
TCGTACGTGC TGCTGGCGCT CGCCGGCGGC CCCGGCCGCG CCGGCGCGGG CCGGGTCTAC
ATCGCCACCA GTCTGCTGGG CTCCACGATC CTGCTCGCCG GCGTCGGCCT GCTCTACGGT
GTCACCGGTA CGGTCGGGCT CGCCGACCTC GCCGGGATGG CACGGAAGGC TCCCGCTGTC
GCGGTCGCCG GTGGTGTCGT CCTGCTGGCG TTCACGCTCA AGGGCGCGCT CGTGCCACTG
CACGACTGGC TGCCCCGCGC CTATCCGGTG GCGTCGCCGG TGGTGGTCGC GCTCTTCTCC
GGGCTGCTCA CCAAGGTGGG GCTGTACGCG ATCATCCGGA TCTACGCCGT GCTGTACGGC
GGTGATCCTG CGTACCATCC GCTGCTGGTG GCGGTGGCGC TGGCGTCCAT GGTGATCGGG
GTGCTCGGCG CGATCGGCGT CGGCTCGATG CGGCGGGTGC TGGCCTTCCA CATGGTGAGC
CAGATCGGGT ACGTGCTGCT CGGGCTGGCC CTGTTCACCG CCGCGAGTCT CGCCGCGGCC
GTTTTCTACC TGGCCCAGTA CGTGTTGGTG AAAGCGGCAC TGTTCCTGTG CGCGGCGGTC
GTGCGGGCCA CCCATGGCAC CGACCGGTTG AGCCGGCTGG GCGGGCTGGC CTCGTCCAAC
CCGCTGCTCG CGTTGGCCTT CGGCATCGCG GCCCTGTCGC TGGCCGGCCT ACCACCGTTC
GCCGGCTTCC TCGCCAAGTT CCTGGTGCTG CGGGCCGCCA ACGAGGTCGG CGCCTGGCTG
ATGTTGACCG TGGCGATACT GGTCAGCCTC GTGACGCTGC TGTCGATGCT GAAGATCTGG
GGCGCCGCGT TCTGGGGCGA GGCGCCGCGG ACGGTCCGCA ACCGTACCGT CCGTCCTGGC
GCGACTCTGC TCGGACCGCC GTTGGCCCTC GGCGTGTGTG CGTTGCTGCT CGGGCCGTTG
GGTGGACCGC TGCTGCAGGT GGCCGACGCC GCCGCGGCGG GGCTGCTCGA GCCGGCCGGC
TACGTGCGGG CCGTGAGCGG GCGGTGA
|
|---|
| Protein sequence | MSILLMIPVA VPLFAAAVLL ALPDRPGMRR VVALLATAAV TAVGVALLVL TRDGDVPVLR
VGGWPPVVAI TLAADPLSAL LVTVSATVVL ACLVAAAGTG EDSQRAFLPL TMVLSAGAYG
AFLTTDLFNL FVLVEVMLVP SYVLLALAGG PGRAGAGRVY IATSLLGSTI LLAGVGLLYG
VTGTVGLADL AGMARKAPAV AVAGGVVLLA FTLKGALVPL HDWLPRAYPV ASPVVVALFS
GLLTKVGLYA IIRIYAVLYG GDPAYHPLLV AVALASMVIG VLGAIGVGSM RRVLAFHMVS
QIGYVLLGLA LFTAASLAAA VFYLAQYVLV KAALFLCAAV VRATHGTDRL SRLGGLASSN
PLLALAFGIA ALSLAGLPPF AGFLAKFLVL RAANEVGAWL MLTVAILVSL VTLLSMLKIW
GAAFWGEAPR TVRNRTVRPG ATLLGPPLAL GVCALLLGPL GGPLLQVADA AAAGLLEPAG
YVRAVSGR
|
|---|
| |