| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_2978 |
|---|
| Symbol | |
|---|
| ID | 5707761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 3383573 |
|---|
| End bp | 3385258 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641272426 |
|---|
| Product | regulator of chromosome condensation, RCC1 |
|---|
| Protein accession | YP_001537794 |
|---|
| Protein GI | 159038541 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning
[Z] Cytoskeleton |
|---|
| COG ID | [COG5184] Alpha-tubulin suppressor and related RCC1 domain-containing proteins |
|---|
| TIGRFAM ID | [TIGR01167] LPXTG-motif cell wall anchor domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.310394 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000443731 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGACAGTT TCTGGACCGG CACGGTCGCG GACGTGAGAG GAAGCTGGGT TCGGCCCGCG
AGTGTGCGGG GGCTGTTCGC GGTGCCGCTG ATGGTGGCGA TCGTGCTGGG CGTGACCTCG
GTCGGCGCGG CGCCCGTGCT CGCGCAGGGT GTGCCGTCGG CGGCAGCGGG TCCGCCTGGT
ACCGGCCTGG CCTGGGGCGA CAACGCCGAG AGCCAGTTGG GCGACGGGAC CACCACCAAC
CGCAGCACCC CCGTGACAGT GGACCTGCCA GCCGACACCA CGATCACCGC TGTCGCCGCC
GGCCAGGGCC ACAGTCTGGC AGTGACCTCC GCCGGCACCG TGCTGGCCTG GGGCGCCAAC
AGTTCCGGCC AGCTGGGCGA CGGGACCACC ACCCCCCGCA GCACCCCCGT TGCGGTGGAT
CTGCCGGCCG GCACCACGGT CACCGCCGTC GCCGCCGGTG ACCGCCACAG TCTGGCGGTG
ACCTCCACCG GCACCGTACT GGCCTGGGGC CTCAACGTCA CCGGCCAGTT ATACGACGGG
ACCACCACGA CCAACAGCAG CACCCCCATT GTGGTGGATC TGCCGGCCGG CACTACGGTC
ACCGCCGTCG CCGCCGGCAA CGCCCACAGT CTGGCGCTGA CCTCCGCCGG CACCGTGCTG
GCCTGGGGCG CCAACAGTTC CGGCCAGCTG GGCGACGGGA CCACCACCCC CCGCAGCACC
CCCGTTGCGG TGGATCTGCC GGCCGGCACC ACGATCAGCA CCATCGCCGC CAGCAGCAGC
AGCCACAGTC TGGCGGTGAC CTCCACCGGC ACCATGCTGG CCTGGGGCGC CAATTTCACC
GGCCAATTGG GCGACGGGAC CATCACCAAC AGGAGCACCC CTGTTGCGGT GGATCTGCCG
GCCGGTACCA CGGTCACCGC CGTCGCCACC GGCAGCGGCC ACAGTCTGGC GGTGACCTCC
ACCGGCACCA TGCTGGCCTG GGGCGGCAAC GGTTCCGGCC AGCTGGGCGA CGGAAGCACC
ACCAGCAGCA GCACCCCTGT TGCGGTGGAT CTGCCGGCCG GCACCACGGT CACCGCCGTT
GCCGGCGGGG CCGGCCACAG TCTGGCGCTG ACCTCCACCG GCACCATGCT GGCCTGGGGC
TTCAACACCT CGGGCCAGCT GGGCGACGGG ACCACCAGCA ACCGCAGCAC CCCCATAGCA
ACGGATCTGC CGGCCGACAC CACGATCACC GCCATCGCCG GCGGCAGCTT CCACAGTCTG
GCTGTCGTCC CGTCGGCATC GACCACGACC CTGCAGGTGT CCCCACCGAA CCCGACACCA
GATCAACCCG TCACCCTCAC CGCCACCGTG ACCTGCACCG GCAGCACCCC CACCGGAACC
GTGACCTACC TAGACGACAC GACGATCCTG GGCACGGAAC CCCTGTCCGG CAACCCCACC
GCCACCGCAA CCCTCACCGT CACACGCCTG ACACCCGGCA CACACCACAT CCACGCGCGC
TACAACGGCG ACAACAACTG CCCAACCTCA ACGTCCGATT CCACGACAGT CACCGTCCCC
AAGCCCACCA TCCCCGTAAC CGGCACCAGC CTGCCCACCA TCCTCACCGC CGGAATCCTG
CTCACCCTCA CCGGCACGGC CCTGACCCTC GCCACCCACC GACGCCGACC AACACACAGG
GCGTGA
|
|---|
| Protein sequence | MDSFWTGTVA DVRGSWVRPA SVRGLFAVPL MVAIVLGVTS VGAAPVLAQG VPSAAAGPPG
TGLAWGDNAE SQLGDGTTTN RSTPVTVDLP ADTTITAVAA GQGHSLAVTS AGTVLAWGAN
SSGQLGDGTT TPRSTPVAVD LPAGTTVTAV AAGDRHSLAV TSTGTVLAWG LNVTGQLYDG
TTTTNSSTPI VVDLPAGTTV TAVAAGNAHS LALTSAGTVL AWGANSSGQL GDGTTTPRST
PVAVDLPAGT TISTIAASSS SHSLAVTSTG TMLAWGANFT GQLGDGTITN RSTPVAVDLP
AGTTVTAVAT GSGHSLAVTS TGTMLAWGGN GSGQLGDGST TSSSTPVAVD LPAGTTVTAV
AGGAGHSLAL TSTGTMLAWG FNTSGQLGDG TTSNRSTPIA TDLPADTTIT AIAGGSFHSL
AVVPSASTTT LQVSPPNPTP DQPVTLTATV TCTGSTPTGT VTYLDDTTIL GTEPLSGNPT
ATATLTVTRL TPGTHHIHAR YNGDNNCPTS TSDSTTVTVP KPTIPVTGTS LPTILTAGIL
LTLTGTALTL ATHRRRPTHR A
|
|---|
| |