| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1796 |
|---|
| Symbol | |
|---|
| ID | 5708379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 2068385 |
|---|
| End bp | 2070319 |
|---|
| Gene Length | 1935 bp |
|---|
| Protein Length | 644 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 641271298 |
|---|
| Product | transcriptional regulator, CdaR |
|---|
| Protein accession | YP_001536673 |
|---|
| Protein GI | 159037420 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3835] Sugar diacid utilization regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.220013 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00020327 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACACCCC GCACAATGGC CGTCATGTCG TCGCCGGTGG AGTTCCTGGA ACTGCTCGCC
CGCGAAGCCG CAGCGGTGGA GTTCGAGGGA CCGCTGGTGG CCGCCCGCGC CGCCGGACTG
CCCCCGGAGC GGCTGGCCGA GCTGGAGCAC GCCAGGACGG TCGCGTTGCG GGTCCGGGCA
CTGCTGGAAC GCCGGCGGCG CCGGGAAAGT GAGCTGTCCG GGCTGTACGA CACGGTCAGC
GACCTGGCCG GGCTGCGCGA TCTGGACGAC GTGCTGCGGG CGATCGTGCA CCGCGCCCGC
AACCTGCTGG GCGCCGACGT CGCGTACATG ACGCTCAACG ACGACCGGCA CGGCGACACC
TACATGCGGG TCACCGACGG CTCGGTGTCC GCCCGGTTCC AACGGCTGCG ACTGCCGATG
GGCGCCGGCC TCGGTGGCCT GGTCGCCCAG TCCGGCGCCC CGTACGTCAC GGCCAACTAT
CCGGAGGACG ACCGGTTCCA CCACACCCGG GAGATCGACG CCGGGGTCGG TGAGGAGGGC
CTGGTGGCCA TCCTCGGGGT GCCGCTGCGG CTCGGCTCGA TCTCGATCGG CGTGCTCTAC
GCGGCCAACC GCTCGGCGCG GCCGTTCGCC CGGGAGGAGG TGGCGCTGCT GGTGTCGCTG
GCCGCGCACG CCACGGTGGC GATCGACAAC GCCCGGCTGC TCGCCGAGAC CCGCTCGGCG
TTGGTGGAGC TGTCGGCGGC CAACACCACC ATCCAGGCGC ACAGCGCGTC GGTGGAGCGG
GCCGCCGCGG CGCACGACCG GATGACCGCG CTGGTGCTGC GCGGCGGCGG GGTGGAGGAG
GTCGCCGCCG CCGTGCCGGA GGTGCTCGGC GGCGCCCTGC TGGCCCTGGA CGCCGAGGGC
CGGCTCCTGG CCCGGGTCGG CGAGATCGAC GAACCGAAGC GGGCGGACAT CGCGGCGGCG
GTGGCCGCGT CCCGGACCGA GGGGCGCAGC GTGCGCCGAG GTCCGTTGTG GTATGCCGCC
GTGGTCGCCG GCACCGAGAA CCTGGGCGCG TTGGTGCTCC GCCCGGACGA CGAGCTGGTC
GACGCCGACC AGCGGATCCT GGAGCGGGCC GCCCTGGTCA CCGCACTGCT GCTGCTGTTT
CGGCGGACCG TCGCCGAGGC GGAGGGGCGG GTCCGCGGCG AACTGCTCGA CGATCTGATC
GCCCACCCGA GGCGCGACGC CGACGCGCTC CGCGACCGGG CCCGCCGACT TGACGTGGAC
CTCGACGCCG CGCATCTGCT GGTCTGCGTT GACGACGGTG CGATCGCCGC GACCGGTTCG
AGCCGGCAAC GGACACTCTC CTGGGCCGCC ACGTACGCCT CCACCCGGGG CGGGCTGGCC
GCGGCACGGA ACGGGCGGGT GGTGCTGATG CTGCCCGGCA CGGACGCGGG TGGCGCCGCC
CGCGCGGTGG CGCGGGACCT GTCGCGGGTG ACCGGCCAGC CGGTGACCGC CGGGGGCGGC
GGTCCCGCCA CCGGTCCGGC CTCGCTGGCA GCGACCTTCC ACGAGGCGGA GCGCTGCCTG
ACCGCGCTCG GCGCGCTGGG ACGAGCCGGG CAGGGCGCCG GGACCGACGA GTTGGGCTTC
GTCGGGTTGC TGCTGGGCTC GGTCGGTGCC GGCGGCGACC GCGACGTGTC CCGATTCCTG
ACCGACACCC TGGGGCCGGT GGTCGACTAC GACGCCCGCC GGGGCACCGC CCTGGTGCGC
ACGCTGGAGG CGTACTTCGG GGTGGGCGGC AGCCTGACCC GTGCGGCGGA ACGACTGCAC
GTGCACGTCA ACACGGTCAC CCAACGGCTG GAACGGGTGG GTCACCTCCT CGGCGCCGAC
TGGCAGCGAC CGGAGCGCGC CCTCGAGGTG CAGCTCGCCC TCCGGTTGCA CCGGCTCAGC
CGCCCGGCCA GCTGA
|
|---|
| Protein sequence | MTPRTMAVMS SPVEFLELLA REAAAVEFEG PLVAARAAGL PPERLAELEH ARTVALRVRA
LLERRRRRES ELSGLYDTVS DLAGLRDLDD VLRAIVHRAR NLLGADVAYM TLNDDRHGDT
YMRVTDGSVS ARFQRLRLPM GAGLGGLVAQ SGAPYVTANY PEDDRFHHTR EIDAGVGEEG
LVAILGVPLR LGSISIGVLY AANRSARPFA REEVALLVSL AAHATVAIDN ARLLAETRSA
LVELSAANTT IQAHSASVER AAAAHDRMTA LVLRGGGVEE VAAAVPEVLG GALLALDAEG
RLLARVGEID EPKRADIAAA VAASRTEGRS VRRGPLWYAA VVAGTENLGA LVLRPDDELV
DADQRILERA ALVTALLLLF RRTVAEAEGR VRGELLDDLI AHPRRDADAL RDRARRLDVD
LDAAHLLVCV DDGAIAATGS SRQRTLSWAA TYASTRGGLA AARNGRVVLM LPGTDAGGAA
RAVARDLSRV TGQPVTAGGG GPATGPASLA ATFHEAERCL TALGALGRAG QGAGTDELGF
VGLLLGSVGA GGDRDVSRFL TDTLGPVVDY DARRGTALVR TLEAYFGVGG SLTRAAERLH
VHVNTVTQRL ERVGHLLGAD WQRPERALEV QLALRLHRLS RPAS
|
|---|
| |