| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1725 |
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| Symbol | gabD1 |
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| ID | 5703424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora arenicola CNS-205 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009953 |
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| Strand | + |
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| Start bp | 1996437 |
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| End bp | 1997852 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641271228 |
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| Product | succinic semialdehyde dehydrogenase |
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| Protein accession | YP_001536603 |
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| Protein GI | 159037350 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.450617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000946553 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCCATCG CCACCACAAA CCCCGCCACC GGACGGACAG TCAGGACGTA CGAGCCCTTC
TCGCCCGAGC AGATCGATGC GGCGATCGAC CGTAGCCACC TCGCGTACCG GAACCTGCGC
GACACCACCG TCGCGCAGCG CGCTGCCTGG CTCGACCGGG CCGCTGACCT ACTCGACGTC
GAGCGCGACG AGGCCGCCCG AATGGCGACC ACGGAGATGG GCAAGACGTA CGCCGCCGCA
CGGGCCGAGG TGACCAAGTG CGCCAGCGCC TGCCGCTTCT ATGCGAGGAA GGCGCCCGAG
TTCCTCGCCG ACGAGCCCGC TGACGCGGCG AGCGTCGGTG CGACCCGGGC GTTCGTGCGG
TACCAACCGA TCGGGCCGGT GCTCGCGGTG ATGCCGTGGA ACTTCCCATT CTGGCAGGTG
CTGCGCTTCG CCGCGCCGGC GCTGATGGCC GGCAACACCG GCCTGCTCAA GCACGCCTCG
AATGTGCCAC AGACCGCTCT CTATCTGGCG GACCTGTTCC GCCGGGCCGG CTTTCCGGAA
GGTGCGTTCG GTGCGCTGCT GGTCGGCTCC GACGCGGTGG AGGCCATTCT GAGTGACCCC
CGGGTCCGCG CCGCGACGCT CACCGGCAGC GAGCGTGCGG GCCGTGCCAT CGCCCAGATC
GCTGGCCGGG AGTTGAAGAA GACCGTGTTG GAACTCGGCG GCAGCGACCC GTTCGTGGTG
ATGCCCTCGG CCGATCTGGA CCGGGCCGCC GAGGTCGCCA CCGTCGCCCG TTGCCAGAAC
AACGGCCAGT CCTGTATCGC CGCGAAGCGC TTCATCGTGC ACACCGACGT GTTCGACGCC
TTCGCGGAGC GGTTCGCCGC GCGCATGTCC GCGCTGCGGG TGGGTGACCC GATGGAGGAC
ACCACCGAGG TGGGTCCGCT CGTCAGCGAA GGAGGCCGTG CTGAGATCAT CGACCAGGTA
CGCGACGCCG TTGACCTGGG TGCGACCATC CTCTGTGGTG GTGAGCGGCC GGAGCGGGAC
GGCTGGTACT ACCCGCCCAC CGTCGTCACC GACCTCACCC CGGAGATGCG GATGTGGACC
GAGGAGGTAT TCGGGCCGGT CGCCGGGCTG TACCGGGTGT CGTCGTACGA CGAGGCGATC
GAGGTTGCCA ACGGCACCGC GTTCGGGCTC GGCGCGAACG CCTGGACTCG AGATCAGCGG
GAACAGGAGC GGTTCGCCAT CGACTTGGAG GCCGGCAACG TCTTCGTCAA CGGTATGACC
ACATCCTTTC CGGAGCTGCC GTTCGGCGGG GTGAAGAACT CCGGGTACGG CCGGGAACTG
TCCGCGCTGG GAATGCGCGA GTTCTGCAAC ACCAAGACCG TGTGGGTCGG TGGTGCGGAC
GATGCCACCT GGTCGGTGGG AACGCACGCC GAGTGA
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| Protein sequence | MSIATTNPAT GRTVRTYEPF SPEQIDAAID RSHLAYRNLR DTTVAQRAAW LDRAADLLDV
ERDEAARMAT TEMGKTYAAA RAEVTKCASA CRFYARKAPE FLADEPADAA SVGATRAFVR
YQPIGPVLAV MPWNFPFWQV LRFAAPALMA GNTGLLKHAS NVPQTALYLA DLFRRAGFPE
GAFGALLVGS DAVEAILSDP RVRAATLTGS ERAGRAIAQI AGRELKKTVL ELGGSDPFVV
MPSADLDRAA EVATVARCQN NGQSCIAAKR FIVHTDVFDA FAERFAARMS ALRVGDPMED
TTEVGPLVSE GGRAEIIDQV RDAVDLGATI LCGGERPERD GWYYPPTVVT DLTPEMRMWT
EEVFGPVAGL YRVSSYDEAI EVANGTAFGL GANAWTRDQR EQERFAIDLE AGNVFVNGMT
TSFPELPFGG VKNSGYGREL SALGMREFCN TKTVWVGGAD DATWSVGTHA E
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