| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_1122 |
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| Symbol | |
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| ID | 5706065 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora arenicola CNS-205 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009953 |
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| Strand | + |
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| Start bp | 1269111 |
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| End bp | 1271483 |
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| Gene Length | 2373 bp |
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| Protein Length | 790 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641270637 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001536021 |
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| Protein GI | 159036768 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01297] cation diffusion facilitator family transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000184806 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGCTGTCAC CCCCGGGCCG GCTCGTCACC GCGGTGCTGA GCGGGCTCAC CGCCACGCCG
GCCGCCGCCC TGACGGTGGA CGGTCCCTGT CGGCGGTCGA CGTCCCGGCG GCCAGCGCTC
CTGCTGCTGG CCGTGGCCAC CACCATCGGC CTGGTCACAG TGCTGGCCGG GGTGGCGGTG
GCGCTGGCCA CAGCGGGGCA CGCCGAGCCG GTCCGGTCGA TCGGCTGGGC AAAGTTGATC
TCCCTGGCCA CCGCGACCGC TGGTCTGCTC TTCGGGGCCG GGCTGCTCCG CCTGCCCGGC
TTGGCCCCCA CCGTCGGGGT GGTCACCCGG CTGTCGTTGG ATGGGCTGAT CATCGCCACC
GCGCTGTGGT TCGTGGGCTG GGTGCTCGTC GCCGAGCCGA CCCGTCTGCT CGGACAGCCT
CCGGCGGCCG GTGCGCCGAT CCTGCTCGCC ACGGTCAGCG CGGCGCTGAT CGTGGGCCTC
GCCACCGTCG TGGTGTTTCG CGTTCCGGTT CCGGCCCCGC GCCGCCGGCT CGCCACGCTC
GGCGCCGGTT CCGCCGCGAC GACCGTTGGC GGGCTCGGCC TCGCCACCGG GTTGCTCCAT
GCTGACACCG GCTGGGCGCT CGGTGGAGCG GCCGTGGCCG CTGCCGGCCT GCTGACGGTG
GCGCTGGTGC TACGCGGGTT CGATCGCCCC TGCCGGTCTG ACATCGACCC GACCTGGCGC
GAGGGCGAGC ACGCCGTGCT ACCGATCCTG GCGATGGCCG GCTCGGCGGC GTACCACCTG
CTTCAGGGTG GCCGTTTCGA CCCGCCCGGC GTGGCCGCCG TCATCGTCGA GGTCTTCGCT
CTGGTCGCCC GGCAGTACCT GACCCTGCAC GACGTCCGCC GGTACGCGCG TCGGCTGGTC
GAGCGGGAGG CGCACTTTCG AGAGCTGGCA CACACCGACG CGCTGACCGG CCTGGCGAAC
CGGCGAGGGC TGCTGCGGGC CCTGCACCGC AGCGCGGCGC GCGGTACCCG TTGCATCCTG
CTCATCCTCG ACCTGGATGG TTTCAAGCAT GTCAACGACG TGCGCGGTCA TGACGCCGGG
GACGCCGTCC TGGCTGAGGT GGGGCGGCGG CTGCGCGACA CCCTGGGCTC CGGCGACGTG
GCGGCCCGCC TCGGCGGGGA CGAGTTCGCC GTTCTGATGC CCGGTCCCCC GGCCGCCGTC
GACCAGATGG GCGAGCGGCT GCTCGGAGTG CTCGGGGCCG CGTACGAGTT GCCCGAAGGG
CCGGTCTTCC TCTCGGTGAG CATCGGTACC GCCGGTGGGA CCGGCCAACC GGACATCGAG
CTGCTGCTGC GGCACGCTGA CCTGGCCCTG CGCTACGCCA AGCAGCGTGG CAAGAACCGG
ATCGAGCGGT ACGACGTCGC ATACGACCGA CTGCTGAGCC GGCGGACGAT GCTGGAGCAC
GAGCTGCGTG GCGCGATCGA ACGCGACGAG CTGCGGCTGG TGTTCCAACC GGTGGCGTCG
TTGCCGTCGG TGCGCCCGGT CGGCGCCGAG GCCCTGCTCA GGTGGCGGCA TCCCAAGCTG
GGCGCGGTTC GACCGGACGA GTTCATCCCA CTCGCCGAGG AGTGCGGCAT GATCGCCAAG
CTGGGGGAGT GGGTGCTGCA CCAGGCGTGC CACCAGCTCT CCCGATGGCT CGCCGACGGA
CATGACGTGT GGGTGTCGGT CAACGTTTCG CCCCGGGAGT TGCACGCCCC GGCGTATGTC
GGCCAGGTCA CCGAGGCCCT GCGGGTACAC CGTGTCCCGC CGCAGCGTCT GGTGTTGGAG
GTCACCGAGC ACGCCGTCGC CACCGACCTG GACGAGCTGA TTCGTCGGCT GACCGCGTTG
CGGCGTACCG GCGTCCGGAT CGCGCTGGAC GACTTCGGTG CCGGATACTC CTCGCTTGGC
CAGCTTCGCC GGCTCCCGAT CGACATCCTC AAGATCGACC ACAGTCTCGT GGCCGAGCAC
GAGCCGGTTC GGCCGGTGGG CACGGACGGT CCGGCTTTCG CCCCGATGGT CGACATCGTG
ATGCGGTTGG GGCACCAGTT CGGTCTCGGG GTCATCGCGG AGGGGGTGAC GACTCCGACC
GAGCTGGCCG CCGTGGTGGC TGCCGGCTGC CACTTCGGCC AGGGCGCCCT CCTCGGTTGG
GGGGTTCCGG CCGAGCACCT GGAGGCGATG TTGGACGCGG CCACCTCGTC GAACGCCCGG
CCGGTTCCTA CCTCGGGCCC GCCCGCGCTG GCATCCGGAC CGCCGCCTCC CCGACGGCTG
CCGTCCCTGC CCGTCCTGGG ACAGCCTGCA CCGCAGCGGG GCGGGTCGGC GGTGCCGAAT
CACCCGGACG GGGAGTTTCG ACAGATCCGT TAA
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| Protein sequence | MLSPPGRLVT AVLSGLTATP AAALTVDGPC RRSTSRRPAL LLLAVATTIG LVTVLAGVAV
ALATAGHAEP VRSIGWAKLI SLATATAGLL FGAGLLRLPG LAPTVGVVTR LSLDGLIIAT
ALWFVGWVLV AEPTRLLGQP PAAGAPILLA TVSAALIVGL ATVVVFRVPV PAPRRRLATL
GAGSAATTVG GLGLATGLLH ADTGWALGGA AVAAAGLLTV ALVLRGFDRP CRSDIDPTWR
EGEHAVLPIL AMAGSAAYHL LQGGRFDPPG VAAVIVEVFA LVARQYLTLH DVRRYARRLV
EREAHFRELA HTDALTGLAN RRGLLRALHR SAARGTRCIL LILDLDGFKH VNDVRGHDAG
DAVLAEVGRR LRDTLGSGDV AARLGGDEFA VLMPGPPAAV DQMGERLLGV LGAAYELPEG
PVFLSVSIGT AGGTGQPDIE LLLRHADLAL RYAKQRGKNR IERYDVAYDR LLSRRTMLEH
ELRGAIERDE LRLVFQPVAS LPSVRPVGAE ALLRWRHPKL GAVRPDEFIP LAEECGMIAK
LGEWVLHQAC HQLSRWLADG HDVWVSVNVS PRELHAPAYV GQVTEALRVH RVPPQRLVLE
VTEHAVATDL DELIRRLTAL RRTGVRIALD DFGAGYSSLG QLRRLPIDIL KIDHSLVAEH
EPVRPVGTDG PAFAPMVDIV MRLGHQFGLG VIAEGVTTPT ELAAVVAAGC HFGQGALLGW
GVPAEHLEAM LDAATSSNAR PVPTSGPPAL ASGPPPPRRL PSLPVLGQPA PQRGGSAVPN
HPDGEFRQIR
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