Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sare_0560 |
Symbol | |
ID | 5705604 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora arenicola CNS-205 |
Kingdom | Bacteria |
Replicon accession | NC_009953 |
Strand | - |
Start bp | 638120 |
End bp | 638965 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641270086 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001535480 |
Protein GI | 159036227 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000376127 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGGAGCAAT CGGTTGAGCT GGCGGTGAAG CGCGCCATTA TGATGATGCA GGAAAATCTC GGTGAACAGC TCACTGTGGA AGATATGGCC CGAGCGGCAA TGTTCAGCAA ATTTCACTTT TCCCGAATCT TCCTACGGGC CACCGGTGTA TCACCCGGCC GCTTCCTTTC GGCCCTACGC CTCCAGCGTG CCAAGCATTT ACTCAGATCG ACGAAGCTCA ACGTGGCCGA CATCAGTCTG CGGGTGGGCT ACAACAGCCT CGGCACGTTC AGCTCCCGCT TTACCCGGAG CGTGGGCCTG TCCCCGACGG CGTACCGCCG GCTCGCCGGC TTCGCGACGC ACATCCCGAT CGACCGCTCC GGCCGACTCG GTCAGCCGTC GGCGGCACGG GTCAGCGGCG AGATTCGCCT CGGGCCTGCC GTCGAACCGG GTCTGATCTT CGTCGGCATG TTCCCCGACC GGATTCCCGA AGGGCGGCCG GTCTCATGCG CGGTGCTGAC CGAGCCGGGC TGTTTCCACT TCGAGTCCGT GCCGACCGGT AGCTGGTACC TGCTGGCCCA GTCGGTGACC GAGAAGTCCC AACAAATGAT GTGGGACCAC GACGCCCCCG ACCAGCGAAT ATCGGTGGCT ACCCACGGGC CGCTCACGGT ACGGTCCGAC ACCGTGGTCG AGGCAGAGCT GACTCTCCAG CCGGCGGGCA CACTTGACCC GCCGGTCCTG CTGGCCCTGT TGGATGTGCG TCCGGAAGCA CCGACCGAAC GGGGTCATAC GGAACCGCGG CCCCTCCTGC AGACCATCGG CCGGCGCCAG TTTCCGTGGA CCCGTGCTTG TCGCCCCGCC GCATGA
|
Protein sequence | MEQSVELAVK RAIMMMQENL GEQLTVEDMA RAAMFSKFHF SRIFLRATGV SPGRFLSALR LQRAKHLLRS TKLNVADISL RVGYNSLGTF SSRFTRSVGL SPTAYRRLAG FATHIPIDRS GRLGQPSAAR VSGEIRLGPA VEPGLIFVGM FPDRIPEGRP VSCAVLTEPG CFHFESVPTG SWYLLAQSVT EKSQQMMWDH DAPDQRISVA THGPLTVRSD TVVEAELTLQ PAGTLDPPVL LALLDVRPEA PTERGHTEPR PLLQTIGRRQ FPWTRACRPA A
|
| |