Gene Sare_0560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSare_0560 
Symbol 
ID5705604 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora arenicola CNS-205 
KingdomBacteria 
Replicon accessionNC_009953 
Strand
Start bp638120 
End bp638965 
Gene Length846 bp 
Protein Length281 aa 
Translation table11 
GC content65% 
IMG OID641270086 
ProductAraC family transcriptional regulator 
Protein accessionYP_001535480 
Protein GI159036227 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000376127 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGAGCAAT CGGTTGAGCT GGCGGTGAAG CGCGCCATTA TGATGATGCA GGAAAATCTC 
GGTGAACAGC TCACTGTGGA AGATATGGCC CGAGCGGCAA TGTTCAGCAA ATTTCACTTT
TCCCGAATCT TCCTACGGGC CACCGGTGTA TCACCCGGCC GCTTCCTTTC GGCCCTACGC
CTCCAGCGTG CCAAGCATTT ACTCAGATCG ACGAAGCTCA ACGTGGCCGA CATCAGTCTG
CGGGTGGGCT ACAACAGCCT CGGCACGTTC AGCTCCCGCT TTACCCGGAG CGTGGGCCTG
TCCCCGACGG CGTACCGCCG GCTCGCCGGC TTCGCGACGC ACATCCCGAT CGACCGCTCC
GGCCGACTCG GTCAGCCGTC GGCGGCACGG GTCAGCGGCG AGATTCGCCT CGGGCCTGCC
GTCGAACCGG GTCTGATCTT CGTCGGCATG TTCCCCGACC GGATTCCCGA AGGGCGGCCG
GTCTCATGCG CGGTGCTGAC CGAGCCGGGC TGTTTCCACT TCGAGTCCGT GCCGACCGGT
AGCTGGTACC TGCTGGCCCA GTCGGTGACC GAGAAGTCCC AACAAATGAT GTGGGACCAC
GACGCCCCCG ACCAGCGAAT ATCGGTGGCT ACCCACGGGC CGCTCACGGT ACGGTCCGAC
ACCGTGGTCG AGGCAGAGCT GACTCTCCAG CCGGCGGGCA CACTTGACCC GCCGGTCCTG
CTGGCCCTGT TGGATGTGCG TCCGGAAGCA CCGACCGAAC GGGGTCATAC GGAACCGCGG
CCCCTCCTGC AGACCATCGG CCGGCGCCAG TTTCCGTGGA CCCGTGCTTG TCGCCCCGCC
GCATGA
 
Protein sequence
MEQSVELAVK RAIMMMQENL GEQLTVEDMA RAAMFSKFHF SRIFLRATGV SPGRFLSALR 
LQRAKHLLRS TKLNVADISL RVGYNSLGTF SSRFTRSVGL SPTAYRRLAG FATHIPIDRS
GRLGQPSAAR VSGEIRLGPA VEPGLIFVGM FPDRIPEGRP VSCAVLTEPG CFHFESVPTG
SWYLLAQSVT EKSQQMMWDH DAPDQRISVA THGPLTVRSD TVVEAELTLQ PAGTLDPPVL
LALLDVRPEA PTERGHTEPR PLLQTIGRRQ FPWTRACRPA A