Gene Sare_0269 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSare_0269 
Symbol 
ID5705284 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora arenicola CNS-205 
KingdomBacteria 
Replicon accessionNC_009953 
Strand
Start bp299357 
End bp301585 
Gene Length2229 bp 
Protein Length742 aa 
Translation table11 
GC content69% 
IMG OID641269797 
ProductRecD/TraA family helicase 
Protein accessionYP_001535192 
Protein GI159035939 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.130609 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGACG TGACTGCTGC GCCCCGTCCC GCCCTGGCGA CACTCGAGGC GGTGTTGGAG 
CGGCTCACGT ACGTCAACGA GGAGACCGGC TACACCGTCG CCCGGGTGGC CACCGACGGC
GGTGGTGACC TGCTGACGGT GGTGGGCGCT CTGCTGGGCG CGCAGCCAGG GGAGAGCCTG
CGGCTGCACG GTCGGTGGTC CTCGCACCCC AAGTACGGTC GACAGTTCGA GGTCGACTCG
TACACCACGG TCCTACCCGC CACGATCCAG GGCATCCAGC GCTACCTCGG CTCGGGCCTG
GTGAAGGGCA TCGGACCGGT GTTCGCCGAA CGGATCGTCG CCCACTTCGG CTTGGACACG
CTGCGGATCA TCGAGGAGGA ACCGGGCCGC CTGGTGGAGG TCCCCGGGCT GGGCCCCAAA
CGCACCGCGA AGATCACCGC GGCGTGGGAG GAACAGCAGG CCATCAAGGA GGTCATGGTC
TTTCTTCAGG GCGTCGGCGT CTCGACCTCC CTCGCGGTAC GGATCTACAA GCAGTACGGC
GACACCTCCA CCGACGTGGT CACCAAGGAG CCGTACCGGC TGGCGGCCGA CGTGTGGGGC
ATCGGTTTCA AGACCGCCGA CACCATCGCC CAGGCGGTCG GCATCCCCCA CGACAGCCCA
CAGCGGGTCA TGGCCGGCCT GCAGTACACA CTCTCCGAGG CCACTGACAA CGGCCACTGC
TACCTGCCCG AGCCCGAGTT GGTCACGGAC GCCACGAAGA TCCTCGACGT GCCCGCCGAT
CTCGTCGCCC GCTGTCTCGA CGACCTGGTC GCCGACGAGG GGGTCGTTCG CGACACGCTG
CCCGGCAGCG ACGCCGAGTC GGTGCGCGCC GTGTATCTGG TGCCGTTCCA CCGGGCGGAG
AGGTCGCTCG CCTCCAGCCT GCTGCGCCTG CTCAGCGATG GGAACGATCG GTTGCCTCAC
TTCGTGGGCG TCGACTGGGC CAAGGCCCTG GCCTGGCTGA GGGCGCGCAC CGGTAACGAC
CTCGCTCCCG AGCAGGAGCA GGCGGTTCGG CTCGCGCTGA CCTCGAAGGT CGCGGTGCTG
ACCGGTGGGC CGGGGTGCGG CAAGAGCTTC ACCGTCCGTT CCATCGTCGA ACTCGCCGCC
GCCAAGAAGG CCAAGGTCAC CCTGGTGGCG CCGACCGGAC GTGCCGCCAA GCGCCTGTCC
GAGCTGACCG GACATCCCGC CGCCACCGTG CATCGGTTGC TGCAGCTGCG CCCCGGCGGG
GACGCCTCCT ACGATCGGGA CAACCCGCTC GACGTCGATC TGCTCGTCGT GGACGAGGCC
TCCATGCTCG ACCTCATCCT CGCCAACAAA CTCGTCAAGG CCGTCCCACC CGGCGCCCAC
CTGCTCCTGG TCGGGGACGT CGACCAACTT CCCTCGGTCG GCGCCGGCGA GGTGCTGCGC
GATCTGCTCG CCGCCCCCAC CGTTCCGCGG GTGCGGCTGA CCCAGATCTT CCGCCAGGCC
GCCCAGTCCG GCGTCGTCAC CAACGCGCAT CGCATCAACG CCGGCCGCCC ACCCCTGCTC
CAGGGCCTGC CGGATTTCTT CCTGTTCGCC TGCGACGACA CCGAGGCCGC CGCCGCCCGC
ACCGTAGACG TCGCCTGTAC CCGCATCCCC GCCACGTTCC GGCTCGACCC CCGCCGGGAC
GTGCAGGTCC TCACCCCCAT GCACCGTGGA CCCGCCGGCT CCGGGACGCT GAACACCCTG
CTCCAGCAAC GACTCACCCC CCATCAGGAA GGGCTACCGG AGCGGCGCGC GGGCGGGCGG
GTGTTCCGCG TCGGCGACAA AGTCACCCAG ATCCGCAACA ACTATGACAA GGGTCAGGCC
GGTGTCTTCA ATGGCACCCT CGGCATCGTC ACCGATCTCT CAGCCGAGGA ACAAACCCTG
ACGGTACGCA CCGACGAGGA CGAGAGCATC GACTACGACT TCGACGAACT CGACGAGCTG
GCCCACGCCT ACGCCATGAC CATCCACCGC TCGCAGGGCT CCGAATACCC TGCTGTCGTC
ATCCCCCTGA CCACCAGCGC GTGGATGATG CTGCAACGCA ACCTGCTCTA CACCGCCGTC
ACCCGCGCCA AACAACTCGT CGTCCTCGTC GGCTCCCGCC GGGCTCTCAG TGCCGCTGTC
CGCACCGTCG GCGCCGGCCG CCGCCACACC GCGCTCAACC ACCGTCTGGA CGCCGCGACC
GACCGGTAG
 
Protein sequence
MADVTAAPRP ALATLEAVLE RLTYVNEETG YTVARVATDG GGDLLTVVGA LLGAQPGESL 
RLHGRWSSHP KYGRQFEVDS YTTVLPATIQ GIQRYLGSGL VKGIGPVFAE RIVAHFGLDT
LRIIEEEPGR LVEVPGLGPK RTAKITAAWE EQQAIKEVMV FLQGVGVSTS LAVRIYKQYG
DTSTDVVTKE PYRLAADVWG IGFKTADTIA QAVGIPHDSP QRVMAGLQYT LSEATDNGHC
YLPEPELVTD ATKILDVPAD LVARCLDDLV ADEGVVRDTL PGSDAESVRA VYLVPFHRAE
RSLASSLLRL LSDGNDRLPH FVGVDWAKAL AWLRARTGND LAPEQEQAVR LALTSKVAVL
TGGPGCGKSF TVRSIVELAA AKKAKVTLVA PTGRAAKRLS ELTGHPAATV HRLLQLRPGG
DASYDRDNPL DVDLLVVDEA SMLDLILANK LVKAVPPGAH LLLVGDVDQL PSVGAGEVLR
DLLAAPTVPR VRLTQIFRQA AQSGVVTNAH RINAGRPPLL QGLPDFFLFA CDDTEAAAAR
TVDVACTRIP ATFRLDPRRD VQVLTPMHRG PAGSGTLNTL LQQRLTPHQE GLPERRAGGR
VFRVGDKVTQ IRNNYDKGQA GVFNGTLGIV TDLSAEEQTL TVRTDEDESI DYDFDELDEL
AHAYAMTIHR SQGSEYPAVV IPLTTSAWMM LQRNLLYTAV TRAKQLVVLV GSRRALSAAV
RTVGAGRRHT ALNHRLDAAT DR