| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_0004 |
|---|
| Symbol | recF |
|---|
| ID | 5707577 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | + |
|---|
| Start bp | 4766 |
|---|
| End bp | 5896 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641269527 |
|---|
| Product | recombination protein F |
|---|
| Protein accession | YP_001534931 |
|---|
| Protein GI | 159035678 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
|---|
| TIGRFAM ID | [TIGR00611] recF protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.366352 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000175389 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | GTGTACGTAC GCCGGCTCGA ACTCGTCGAT TTCCGCTCGT ACGAGCGGGT CGGCGTGGAC
CTCGAACCGG GGGCGAACGT CCTGGTCGGC CACAACGGGG TCGGCAAGAC CAACCTGATC
GAGGCGCTCG GCTACGTGGC GACCCTGGAC TCCCACCGGG TCGCCACCGA CGCCCCGCTG
GTCCGGATGG GCGCCGGTGC GGCGGTCATC CGCTGCGCGG TGGTGCACGA GGGCCGCGAG
TTGCTGATCG AGTTGGAGAT TGTCCCGGGG CGGGCCAACC GGGCCCGGCT CGGTCGGTCC
CCGGCCCGGC GAGCCCGGGA CGTGCTCGGT GCCCTGCGGC TGGTGCTCTT CGCCCCGGAG
GACCTGGAAC TGGTCCGGGG CGACCCGGCC GAGCGCCGCC GCTACCTTGA CGACCTGCTG
GTGCTCCGAC AGCCTCGCTA CGCCGGTGTG CGGGCCGACT ACGAACGGGT GGTCCGGCAG
CGCAACGCCC TGCTGCGCAC CGCGTACCTG GCCAGGAAGA CCGGCGGCAC CCGCGGTGGG
GACCTGTCCA CGCTCGCGGT GTGGGACGAC CACCTCGCGC GGCACGGCGC GGAACTGCTC
GCCGGTCGAC TCGACCTCGT TGCCGCGCTC GCCCCTCATG TGACCAGGGC ATACGACGCG
GTGGCCGCCG GCACGGGCGC CGCCGGAATC GCGTATCGAC CCTCGGTTGA GCTGCCCACC
CCGACCACCG ACCGGGCTGA CCTGACCGCG GCGTTGAGCG CCGCGCTCGC CGCCGGCCGG
TCCGCTGAGA TCGAGCGGGG AACCACCCTG GTCGGCCCGC ACCGGGACGA CCTCACCCTG
ACGCTGGGGC CACTGCCCGC GAAGGGGTAC GCCAGCCACG GCGAGTCCTG GTCCTTGGCG
CTGGCACTCC GGCTGGCCGG ATACGACCTG CTGCGGGTCG ACGGAATCGA ACCGGTGCTG
GTGCTGGATG ACGTCTTCGC CGAGTTGGAC ACGGGCCGTC GGGATCGGCT CGCGCAACTG
GTCGGCGACG CGAGTCAACT CCTGGTGACG TGCGCGGTGG AGGAGGATGT TCCCGCGCGT
CTGCGGGGTG CGCGGTTCGT TGTCCGCGGT GGGGAGGTGC ACCGTGCCTG A
|
|---|
| Protein sequence | MYVRRLELVD FRSYERVGVD LEPGANVLVG HNGVGKTNLI EALGYVATLD SHRVATDAPL
VRMGAGAAVI RCAVVHEGRE LLIELEIVPG RANRARLGRS PARRARDVLG ALRLVLFAPE
DLELVRGDPA ERRRYLDDLL VLRQPRYAGV RADYERVVRQ RNALLRTAYL ARKTGGTRGG
DLSTLAVWDD HLARHGAELL AGRLDLVAAL APHVTRAYDA VAAGTGAAGI AYRPSVELPT
PTTDRADLTA ALSAALAAGR SAEIERGTTL VGPHRDDLTL TLGPLPAKGY ASHGESWSLA
LALRLAGYDL LRVDGIEPVL VLDDVFAELD TGRRDRLAQL VGDASQLLVT CAVEEDVPAR
LRGARFVVRG GEVHRA
|
|---|
| |