| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3600 |
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| Symbol | |
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| ID | 4605847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 4233484 |
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| End bp | 4234992 |
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| Gene Length | 1509 bp |
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| Protein Length | 502 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639783021 |
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| Product | putative diguanylate phosphodiesterase |
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| Protein accession | YP_929472 |
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| Protein GI | 119776732 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACAGAG CTGTCACTTC GGCCTTCCGG GTATCTATCA TTTATGCGGT TTTTGCCGGG
TTTTGGATCC TGTTTTCAGA TATCGCCGTC GAAATACTGC TCGACAGTCC ACAGCTTCGC
GCTATAGCAC AAACGTACAA GGGATTGGCC TTTGTCATCA TCACGGCAAC CCTGCTGCTG
ATGTTGGTGC TCAGGAGTAA CAGGGCGCTG GAAAAAGCCA ATGAAATGGA CAGCCTCACC
GGCCTTTGCA GTCTCAGCGT GTTTATTCGT TCCTTGAATA ACACCATCCG CAAGCTTAAA
ACCAATGAAC GCCTTATTCT GGGTTATCTG GACATCGACG ATTTCAAGCA AATCAACGAC
AACTTTGGCT ATGAGCGTGC CGATGCTTTC TTGCGTGATT TGGCCAACGA CATCACTGAT
GCCGCCCTGC CAGGCTCTGT GGTTTCACGC TTACACGCAG ATCAATTTGC CAGTTTTGTT
CGCTTGGATA CTTCGGTGGA TATGGAAGCC CATGTACGGG GATTTCAACG TTTATTCGCC
CACCGGGCCA GGCAACATGG GATTGATGCC ACTTGTTGTA TCGGTGTCGC CCTGTTTCCA
GCCGATGGCA CCAATGCCAA AGATATGATG GTATCGGCCA CCGAAGCGCT GAATATGGCC
AAAAAGAAGA AAAATGCCAT CCAGTACCAC GATAAGGCGC TCAGCGAAAA AGCCTTGCAA
CGCCGCCAGT TGGTTATGGA TTTACGCCAA GCCATCAGTG ACGAAGTCCT GTCGCTGGTA
TATCAGCCCA AATATGATCT GAGTACGCTC ACTGCCTGTG GCGTTGAAGT GCTGGTGCGC
TGGCATCACC CGGTGAAGGG GTATATTGCT CCCGATGTGT TTATTCCGCT TGCAGAGGAA
ATCGGCCTGA CAGCCGCCAT CTCCAAGCTG GTGGTCGACA AAGCGGCTGC GGAGCTTGGC
AGTGCAGGTT TGCTGGACGG CAGTCTGGCG CATGTGGCCG TAAATGTGTC GGCGGACGAA
TTCAATAACG CCGACGAAAT GTATGCATTG ACCCAATTTA TCAAGAGTAA AAAGGCCCTG
GCACCCTTTG TGCGGATTGA AATTACTGAA ACCGCCACCC TCACAGATAT GCATAAGAGT
GTGGAGATTA TTTCCAACCT GCAGGCCAGT GGTATCACCT TTTCCATCGA TGATTTCGGT
ACCGGTTACA CCTCTTTGGC GATGCTAAAA GACCTGACTG TTGATGAGAT TAAAATCGAC
CGCAGTTTTG TTTCAGGGGT GGAGCAGGAC GAGCGATCAC GCACCATTGT CAGCGCTATT
GTTGCCATGG CCCAGAGTTT TGATATTCAT ATCGTGGCGG AAGGGGTCGA AAATGCCGCG
CAGCTGAAAA TTTTGCAGGA TATGGGATGT CAGCAGGCTC AGGGTTATTA TCTGGGACGC
CCCATGGCAT TGCATGATTT GGTGAAGCAT CTGAATCAAG ACGCCACCGA GTTCAGCGCA
GCTCACTGA
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| Protein sequence | MHRAVTSAFR VSIIYAVFAG FWILFSDIAV EILLDSPQLR AIAQTYKGLA FVIITATLLL
MLVLRSNRAL EKANEMDSLT GLCSLSVFIR SLNNTIRKLK TNERLILGYL DIDDFKQIND
NFGYERADAF LRDLANDITD AALPGSVVSR LHADQFASFV RLDTSVDMEA HVRGFQRLFA
HRARQHGIDA TCCIGVALFP ADGTNAKDMM VSATEALNMA KKKKNAIQYH DKALSEKALQ
RRQLVMDLRQ AISDEVLSLV YQPKYDLSTL TACGVEVLVR WHHPVKGYIA PDVFIPLAEE
IGLTAAISKL VVDKAAAELG SAGLLDGSLA HVAVNVSADE FNNADEMYAL TQFIKSKKAL
APFVRIEITE TATLTDMHKS VEIISNLQAS GITFSIDDFG TGYTSLAMLK DLTVDEIKID
RSFVSGVEQD ERSRTIVSAI VAMAQSFDIH IVAEGVENAA QLKILQDMGC QQAQGYYLGR
PMALHDLVKH LNQDATEFSA AH
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