Gene Sama_3537 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3537 
Symbol 
ID4605784 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp4168309 
End bp4169490 
Gene Length1182 bp 
Protein Length393 aa 
Translation table11 
GC content55% 
IMG OID639782958 
ProductGGDEF family protein 
Protein accessionYP_929409 
Protein GI119776669 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACATCC AAGCTGAGAT CCTCATTGAG GTCATAGTGC TGTTGACGGC CGCCTGTGCC 
GCAGCCTGGG CTCTGCTGGC GGGCCCATTA CGCATAGCGC CAAAGGCATG TCGCCAGTAC
GCGGTGGCCA ATGGATTGTT GATGTTGGGG CTGATTCTCA ATGCGTTACG CACGGAGGGG
GCGAGCTATA TCACTTGGTT CGGCGCCGAT TTAAGCCTCA TTGCCGGCAT CATCATGATG
CGCTTTGGCA CAGTATTCCT GTTTCGACTA CCAATAAACT ACAAGCCTGA GCTGTTGCTG
TTGGCTGTGG TGATATTTGC CATGCTGATG GTACCGCCTT CGGTGGAGTC ACAGCATTAT
CTCGGCATCG TGTTCTCGCT GGCGGCGGCC CTCTTGTTTG TACGTTTGGG TGAATCAACC
TACAAGGGAC TTCTGCCCAG TGTCGGCCAT AACATCACCT TGCTGCTGGT GATGCCATTG
ATACTGGCGG CTGTGCTGTT TTTAGTGCGG CTCGGTCTTA TCATGACCCA GGAAGATGCA
GAAGCCCGTT TTATTTCCAT CCATACCGCT GAAGCTGTGC CCATGCTGTG GTTTTATCTG
GTGCTCAGCC TCAGTATCAA TGTCGTTGCC ATGGGCAATG CCCTTACCCG CCTGGTGCAA
AAAATCAGGG TGCTGGCGGA CAGAGACATG CTGACAGGTC TGTGGAATCG TCGCAGCGCA
GAACTGAGGC TAAGAGAGCT CAACCTGCGC TGGCAGAAGG GGCGAGAACC ATTTGCCATC
GTGTTGCTGG ATTTGGATCA CTTCAAAAAA ATCAACGATA AGCTCGGGCA TCAGGCCGGT
GATGCGGCGC TGCGGCAAGC GGCGCTGATA TTAAGCCATA GTCTCAGAGA AACCGATATG
TTATGCCGTT TTGGCGGCGA GGAGTTTCTG GTTATTTTAT CCGGTGTCGG CATTAAGCAG
GCACATCTGG TGGCCGAAAA ACTGAGAGAG AGTCTGGCTG CAACGGCGCT GCGCTGGGAT
GACGATGAAG TGGTATTGAG CGCAAGTTTT GGCTGCGCCG CGATGGTGGA TGGGATGAGT
GTCTCTCAGC TGATTTCGGC AGCCGACCAC GCCATGTATC AGGCCAAGGC AGGTGGCCGC
AACTGCGTGA TGGACTCAGC GGCCGGGCCA CTCCAGGTCT GA
 
Protein sequence
MDIQAEILIE VIVLLTAACA AAWALLAGPL RIAPKACRQY AVANGLLMLG LILNALRTEG 
ASYITWFGAD LSLIAGIIMM RFGTVFLFRL PINYKPELLL LAVVIFAMLM VPPSVESQHY
LGIVFSLAAA LLFVRLGEST YKGLLPSVGH NITLLLVMPL ILAAVLFLVR LGLIMTQEDA
EARFISIHTA EAVPMLWFYL VLSLSINVVA MGNALTRLVQ KIRVLADRDM LTGLWNRRSA
ELRLRELNLR WQKGREPFAI VLLDLDHFKK INDKLGHQAG DAALRQAALI LSHSLRETDM
LCRFGGEEFL VILSGVGIKQ AHLVAEKLRE SLAATALRWD DDEVVLSASF GCAAMVDGMS
VSQLISAADH AMYQAKAGGR NCVMDSAAGP LQV