| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3497 |
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| Symbol | |
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| ID | 4605744 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 4127316 |
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| End bp | 4129898 |
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| Gene Length | 2583 bp |
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| Protein Length | 860 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639782918 |
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| Product | putative methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_929369 |
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| Protein GI | 119776629 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.19961 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCAG GCAATAAAAA GCTGATGGGG CCAGCCCCAT TTACCTTGGC CGGCATGGTG
ATAGTTGCCG TTTCTTTGGT ACTCAGCCTG ATGGGGCAAT CCGGCAACAT GGTCAGTGCT
GCCCTGGTTG TAGCGCTGAT TGTTTTGGGT ATTGGTTTAA GTCAGGGCGG CCCAAGAGTC
GCAGAAGCTC TGGCAGAAAT ACGTCAGGCA CTGCGAAGCC ATAACAGACC CAAACTTGGC
AGTTACGATA TCCCTGGCTG GCAGGAGTTC TCTGAAGAAT TTGCCATCTT CTGGGACGAG
CAGCAAAAAG GCCGCGCCAC TCTCAAAGCC CTGGATATCT GCCAGGCTAA CGTAATGCTG
GCGGACCCCA ACGGGGAAAT CCTCTACTTT AACGACTCGC TCCGCACCAC ACTGAGCGAT
GCAGAAGCGG ATATTCGCAA AGAATTACCC AACTTTGATG TGAGTCGCCT GCAGGGCGCC
AACATGGACA GCTTCCATCG GGATCCATCC CATCAGCGCC GTCTGATAGC CGGGTTAAAA
TCCACCTACT CCGCCAAAAT CAAGGTCGGT ACCCGTACCT TCAGCCTGAT AGCCTCCCCC
GTGTTCGATG AACAGCATCA ACGTATCGCA ACCGTAGTGG AATGGCAGGA CTTAACTGAA
TCCCTGGCAC GGCAGCAAGC CGAAGAAAAA CTGATCCGCG AAACCAACCG TATCAAGCAG
GCGCTGGATG TGTGTCAGGC GAACGTGATG ATGGCCGATG AAAATAACAA CATCATTTAC
TTCAACCACT CCCTCCAAGC CATGTTGGCC GGTAATGAGG AAAAGCTGCG CGAATCCATC
AACCGATTTG ATGTTTCCAC CCTGATGGGC ACCAACATAG ATATCTTCCA CAAACACCCC
GAGCATCAGC GCCAGTTACT GGCCAAGCTC ACCAGCTCGT ACAAGGCCCG TATCAAGGTA
GCAGGCTTGA CCTTCGACCT GATTGCCACA CCGGTATTCG ACAATGGCAA ACGCACAGGC
ACCGTAGTGG AGTGGAGCGA CATTACTGCA CAGTTGGCCA GGGAAGAGAA AGAACGGGCT
CTCGCTGCCG AAAATGCCCG AATCCGTCAG GCGCTTGACA ATGTATCGTC AAACACCATG
GTGGCGGATG CAGACTGCAA CATCATCTAT CTCAATGATG CCGTTAAAAA AATGTTCAGC
ATTGCCCAAT CCGACATTGT CAGGGATCTG CCCAATTTCA ACAGCAATAA GCTGATGGGT
GCAAATATCG ATGTGTTCCA TAAAAACCCT GCTCACCAAC GAAACCTGCT GGCTAACCTC
ACCAGTACTT ACACCAGTCA ACTTAAAGTC GGTGGTCGCA CCTTCCGGAT CATCGCCAAC
CCTATCAACG ACACCGATGG CACCCGCATA GGGACTGTGG TTGAGTGGGC AGACCGCACC
GCTGAAACGG CCATCGAGCA TGAGATTGAT GGCATCATCG CGGCCGCAAG CTCGGGCGAT
TTGTCACAGC GCATTGCCAC CCATGATAAA GAAGGCTTCT TCCTCAATCT CTCCAACGGC
CTCAACAGCC TTGTCGGCAT TGCCGATAAC GTTATTTCCG ATGTCGTTGA TATGTTTGAC
GGTTTGGCCA AGGGTGATTT AACCCGCAAG ATTAATGGCG AATATGAGGG CCAGTTCGGC
AAGCTCAAGG CCGACGCCAA TGCTACCGTC AGCCGCCTGA CCGAAGTCCT CGGCGGCATC
AGCGAATCAG CCAATACCGT CACTTCAGGC GCCGAAGAAA TAGCTCAGGG CAATGCCGAT
CTGAGCCAGC GCACCGAAGA GCAAGCCGCG TCACTGGAAG AAACAGCCTC CAGCATGGAA
CAGATGACGG CCACCGTAAA ACAGAGCGCC GAAAACGCCA CCCTGGCTAA CACCCTCGCC
AAAGAAGCCT CTACCAAGGC AGATCATGGC GGCAAGGTAG TCAAGCAGGC AGTCACCGCC
ATGGAGGCCA TTAACGAATC CAGTAAGCGC ATTGCTGACA TCATAGGTGT CATCGACGAA
ATCGCCTTCC AGACTAACCT ACTGGCACTG AATGCAGCGG TAGAAGCAGC CCGCGCCGGT
GAACAGGGCA GAGGCTTTGC CGTGGTGGCT GGCGAGGTTC GCAATCTCGC CCAACGCTCA
GCGGGGGCGG CCAAGGAAAT CAAAGAACTT ATCCGCGACA GCGTCAATAA GGTCAATGAC
GGTACCTCGT TGGTGAACCA ATCCGGTAAT ACCCTGCAGG AAATCGTGCA TGCGGTATCC
AAGGTGGCTG AGATGATTAA TGAAATCAGT GTCGCAGCCG AGCAGCAGGC ATCAGGCATT
CAGGAAGTTA ATAAAGCAGT GTCTCAAATG GACGAGATGA CCCAGCAAAA CGCGGCACTG
GTGGAAGAAG TATCCGCAGC TGGTGATGCC ATGGCCGAGC AGGCCCGCAA TATGCGACGT
CAACTCGGGT TCTTCAGAAC CGACGTACAG GCATCCTCAG CGGCGCCACT GGCATTGGTC
GCTGGCGGCG AAAAACGGCC GACCAAATTT AAAGCCAGTA AAGAAGAATG GCACGAGTTC
TGA
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| Protein sequence | MDAGNKKLMG PAPFTLAGMV IVAVSLVLSL MGQSGNMVSA ALVVALIVLG IGLSQGGPRV
AEALAEIRQA LRSHNRPKLG SYDIPGWQEF SEEFAIFWDE QQKGRATLKA LDICQANVML
ADPNGEILYF NDSLRTTLSD AEADIRKELP NFDVSRLQGA NMDSFHRDPS HQRRLIAGLK
STYSAKIKVG TRTFSLIASP VFDEQHQRIA TVVEWQDLTE SLARQQAEEK LIRETNRIKQ
ALDVCQANVM MADENNNIIY FNHSLQAMLA GNEEKLRESI NRFDVSTLMG TNIDIFHKHP
EHQRQLLAKL TSSYKARIKV AGLTFDLIAT PVFDNGKRTG TVVEWSDITA QLAREEKERA
LAAENARIRQ ALDNVSSNTM VADADCNIIY LNDAVKKMFS IAQSDIVRDL PNFNSNKLMG
ANIDVFHKNP AHQRNLLANL TSTYTSQLKV GGRTFRIIAN PINDTDGTRI GTVVEWADRT
AETAIEHEID GIIAAASSGD LSQRIATHDK EGFFLNLSNG LNSLVGIADN VISDVVDMFD
GLAKGDLTRK INGEYEGQFG KLKADANATV SRLTEVLGGI SESANTVTSG AEEIAQGNAD
LSQRTEEQAA SLEETASSME QMTATVKQSA ENATLANTLA KEASTKADHG GKVVKQAVTA
MEAINESSKR IADIIGVIDE IAFQTNLLAL NAAVEAARAG EQGRGFAVVA GEVRNLAQRS
AGAAKEIKEL IRDSVNKVND GTSLVNQSGN TLQEIVHAVS KVAEMINEIS VAAEQQASGI
QEVNKAVSQM DEMTQQNAAL VEEVSAAGDA MAEQARNMRR QLGFFRTDVQ ASSAAPLALV
AGGEKRPTKF KASKEEWHEF
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