Gene Sama_3433 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_3433 
Symbol 
ID4605680 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp4062455 
End bp4063816 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content60% 
IMG OID639782853 
Productsensor protein CpxA 
Protein accessionYP_929305 
Protein GI119776565 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0911326 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.239328 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACACCC AAACCCTGCC CAATCGCCTC TTTATCAAAC TGCTGCTCGG TTTCTGGCTA 
TGCAGCTCTG TGGTGCTGGT TGCCGTAGGC AGCCTGCCAC TGCTGCAACA GCAGCGGGAA
TCCACCCCCA TTCCCAAAGA GCTGCAACAG ACTCTGGATA AGATTGCCAG GGCGATTGAG
CGGGAGCCTG AACTGATGGA GCCAGAGCGG ATGCGGCGCT GGGAGCGCTC GCGTCACGCC
GACGGCAAGC CCATGCGGGT ATTTATCACC AATGAGGAAG GCCGCATTCT CGGCGAGCGC
CAACCCCGCT CTCTGCGTAA ATTTATCCTG CTCGCCGAAG AAGCCGAGCG CCCCATCATG
TATCAGTTCC GCGATGAAAT GGTGTTTGGC CCCAAGGAGT TCCATGTCGA TGGTAAGGAA
TACCACCTCT ATGGCCGGGT GCCAGGGCAG CATCCACGGC CACTGTTCCT GTTTTTTATC
GAGCACAAGT TGCTGACACT GGGGCTCGCG GTGTTGGTCT CGGGGCTCTT GTGCGGCCTG
CTGGCATGGC ACCTTGGCAG GCCCCTTAAG ATGTTGAAAC AAAGCGCCGA TGCCTTGGCA
CGGGGCAACC TTGGCAGCCG GGTCGATGAA GCCACCCTGA ATCGCCGGGA TGAGTTGGGC
CAGCTGGGCC ATGCCTTCAA CGCCATGGCC GAAGCCATTG AGCAGCAGGT CAACAATCAG
CAGCGACTGA TGGGGGACAT CAGCCACGAG CTGCGCACCC CCCTGACCCG GCTGCAGCTG
GCGCTGGCAT TGGCACGCAA GCGAGGTCAG GACAGTAATG AGCTAAACCG TATTGCCCAC
GAGGCCGAGC AGCTCGATGC CCTGATAGCC GAGCTGTTGA CTCTCTCCCG GGTGACCATG
GGCGCCACCG AGGCCAAAGT TGACATCGAA CTTGCCGAGA CCCTCGGCCA GGTATTGGAT
GATGCGGAGT TTGAAGCCAG CGAATGCGGC AAGCATCTGG CCATTGAAAT GGACGACAAC
CTGCTGTTAA GCCACACCCC CAAGTTATTG GCACGGGCGG TGGAAAATTT GCTGCGTAAC
GCCATCCGCT ACGCCAGGCT GCAGGTCAGT CTGACTGTGA CAGACACTCA GGACCGCATT
GAAATTCAAA TTTGTGATGA TGGCCCCGGC GTGGCTGACG CCGAACTCGA AGCCATCTTC
CGTCCTTTCT ATCGCACCGA TAAGTCCCGC GAGCGTGAGA GCGGCGGTTG GGGGCTTGGC
CTCGCCATTA CCGCGGCGGC CATCGAAGCC CAGGGCGGCA GCATCAGCGC CCAAAACAGG
CCAACCGGCG GCCTGTGCGT AACGATTTGC TTGCCGCGTT AA
 
Protein sequence
MNTQTLPNRL FIKLLLGFWL CSSVVLVAVG SLPLLQQQRE STPIPKELQQ TLDKIARAIE 
REPELMEPER MRRWERSRHA DGKPMRVFIT NEEGRILGER QPRSLRKFIL LAEEAERPIM
YQFRDEMVFG PKEFHVDGKE YHLYGRVPGQ HPRPLFLFFI EHKLLTLGLA VLVSGLLCGL
LAWHLGRPLK MLKQSADALA RGNLGSRVDE ATLNRRDELG QLGHAFNAMA EAIEQQVNNQ
QRLMGDISHE LRTPLTRLQL ALALARKRGQ DSNELNRIAH EAEQLDALIA ELLTLSRVTM
GATEAKVDIE LAETLGQVLD DAEFEASECG KHLAIEMDDN LLLSHTPKLL ARAVENLLRN
AIRYARLQVS LTVTDTQDRI EIQICDDGPG VADAELEAIF RPFYRTDKSR ERESGGWGLG
LAITAAAIEA QGGSISAQNR PTGGLCVTIC LPR