| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_3374 |
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| Symbol | |
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| ID | 4605621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 4000044 |
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| End bp | 4002584 |
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| Gene Length | 2541 bp |
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| Protein Length | 846 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639782794 |
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| Product | penicillin-binding protein 1A |
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| Protein accession | YP_929246 |
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| Protein GI | 119776506 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGTGGC TAAAACGTAT TCTCATTGCC CTCTTTAGTT TAGCCCTACT CGGAGTAGGC
GCTATTATTG CGGCATATTT TTATGTTTTA CCTGATCTGC CTGATGTTAC GACCCTTAAA
ACGGTTCAGT TGCAAACACC GCTGAAGATA TACAGCCAGG ACGGCAAGCT CATCTCTCAA
TACGGTGAAA AACGCCGTAT TCCAATGAAG CTGGAAGATG TACCCAAGCC GTTGCTTCAG
GCTTTTTTGG CCACCGAGGA TGCACGTTTT TACGAGCATC AGGGGATAGA CCCCATAGGC
ATCATTCGTG CCGCCTTTGT GCTTGCCGCT ACCGGCGAGA AAAAACAGGG GGCCAGTACC
ATCACCCAAC AGGTGGCGCG TAACTTCTTT CTCACCAGAG ACAAGACTAT TATCCGTAAA
GTAAAAGAAA TCTTTATTTC TTTTCACATT GAGGAATTGC TCACAAAAGA TGAAATCCTC
GAGCTTTATG TAAACCGTAT CTATTTAGGT CAGCGTGCTT ATGGTGTAGG TGCAGCGGCG
CAGGTTTACT ATGGCAAAGA TTTGAAAGAT TTATCACTCG CCGAATTGGC GGTGATTGCC
GGTCTCCCCA AGGCTCCATC AACACTGAAC CCCATTACCT CACCCGAACG AGCGATGAGT
CGCCGTAATA TTGTGTTGAT GCGGATGCGC GAAGTGGGCT ACATCAACGA CAGCGAATAC
CAGCTGGCGA TATCCGAACC CAACACCGCC TCTTATCATG GCGCTGAGAT AGATCTTTAT
GTGCCTTACG TCTCGGAAAT GGCACGGGAC TACATGATTC AAAAGTATGG CGAGGAAGAA
GCCTATACCG GCGGTTATAG CGTATACACC ACGGTAGATT CTGAGCTGCA GTTAAAAGCA
CAGAAAGCGC TGCGTAACAA CATATACGCC TATGACGAGC GTCATGGCTA TCGCGGCGCA
GCGCAGGTAC TGTGGAAAGA TGAGGCTCCC GCAACGGATA CCATTGTCAG CACCCTGAAA
AAAGTCGCAT CGGTGCAGGA GTTGGAACCC GCAGCCGTCA TCAATGTGCA GGAACAGCAG
GCCACCGTAC TGCGAAACAA CGGCGAAACC GTCACCCTAC CATGGCAAGG CATTCAGTGG
GCACGTAAGT TTATCAGCGA CACCCGTCAG GGTGCTGCCC CCAAAACAGC CACCGATGTG
CTAACAGCCG GCGAGCGTGT ATGGATCCGT CACAATGGAG AAGACTGGCA ATTATCCCAG
GTGCCGGAAG TATCCAGTGC CATAGTGTCA CTCGATCCCC ACAATGGTGC TATCCGTGCT
CTGGTTGGAG GTTACAGCTT CAGTCAGAGT CAGTTTAACA GGGTCACACA AGCCAAACGC
CAGCTTGGTT CCAACATCAA GCCTTTTATC TACGCCGCCA CGTTGGAAAA AGGCTATACC
CTGGCAACGC TTATCAACAA TGCGCCCATC AACAAACCTG ACTTGAGCCA AGGTACGGCC
TGGCGACCCA AAAATTCGCC GGACACTTAC ACAGGTCCCA CCCGTCTGCG AGTTGGCCTG
GCACAGTCGA TTAACGTGAT GGCCGTCCGG GCACTTCGCT ACTCAGGCAT AGATGCAACC
GTTGAGCTAT TGACCCGTTT TGGATTTGAT CCCAATGATT TGCCACGTAA TGAATCACTG
GCACTGGGCT CGCCTTCCGT TACACCGCTG CAGGTTGTCA GGGCCTTCAC TGTGTTCGCC
AACGGTGGTT ACCTGGTTGA ACCTTTCTTC ATTGACAGAG TCGAGTCTGC CACCGGAAAT
CTGGTCGAAA AGACTCAGCC AGCATTAGCT TGCGAAGCGC CGATTCCGGA AGAGGTGTCT
GAGGACATGG CGACGACCGA AGCCTCTGCT CCGCCGGCTA TGCTGAATGC AGCAACGCCA
GCTGATCCTT CCAGTCAATG TGGCGATCCT GCTGCCCGTT ACGCAAATCG GGTGATATCC
GAGCAAAATG CATTCCTTAT TACCGAAGCG CTCAAGAGTG TGATTTGGGG TGGCGGTGAC
TTCAGTAAGG GCACTGGTTG GAATGGTACC GCATGGCGCG CTGCTCGTTT GCTGAAACGC
CATGATATTG CTGGTAAAAC GGGTACAACT AACGAGTCTC GCGATACCTG GTTCAGTGGT
TTTAATCCTG ATTTGGTGAC CACTGTTTGG GTTGGCTTTG ACGATCATGG CCGCGAGCTT
GGCCGTACTG CCTGGAACGC CAATGGCGCC AAAGACCAGA TATCCGGGGC AGAGGCGGGC
GCGAAAACTG CAGGTCCTGC CTGGAACGAA TTTATGTTTA TGGCGCTTGC AGACACGCCA
GAAAAGCCCA TGCCGGTCCC TGCAGGCATA GTCTCTGCCC GTATCGATTA CAGTTCGGGC
AAGCTGAGCC GCCGCACCGA CTACACAAGC GGATTTGAAT ACTTTGCCGC TGGTACAGTG
CCAACAGATT ACGCCAATTC TGCCATCGCC GAAGATGACA CTACGGCCCC GGAAACAACC
GCTGACGACC TGTTTCAGTA A
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| Protein sequence | MKWLKRILIA LFSLALLGVG AIIAAYFYVL PDLPDVTTLK TVQLQTPLKI YSQDGKLISQ
YGEKRRIPMK LEDVPKPLLQ AFLATEDARF YEHQGIDPIG IIRAAFVLAA TGEKKQGAST
ITQQVARNFF LTRDKTIIRK VKEIFISFHI EELLTKDEIL ELYVNRIYLG QRAYGVGAAA
QVYYGKDLKD LSLAELAVIA GLPKAPSTLN PITSPERAMS RRNIVLMRMR EVGYINDSEY
QLAISEPNTA SYHGAEIDLY VPYVSEMARD YMIQKYGEEE AYTGGYSVYT TVDSELQLKA
QKALRNNIYA YDERHGYRGA AQVLWKDEAP ATDTIVSTLK KVASVQELEP AAVINVQEQQ
ATVLRNNGET VTLPWQGIQW ARKFISDTRQ GAAPKTATDV LTAGERVWIR HNGEDWQLSQ
VPEVSSAIVS LDPHNGAIRA LVGGYSFSQS QFNRVTQAKR QLGSNIKPFI YAATLEKGYT
LATLINNAPI NKPDLSQGTA WRPKNSPDTY TGPTRLRVGL AQSINVMAVR ALRYSGIDAT
VELLTRFGFD PNDLPRNESL ALGSPSVTPL QVVRAFTVFA NGGYLVEPFF IDRVESATGN
LVEKTQPALA CEAPIPEEVS EDMATTEASA PPAMLNAATP ADPSSQCGDP AARYANRVIS
EQNAFLITEA LKSVIWGGGD FSKGTGWNGT AWRAARLLKR HDIAGKTGTT NESRDTWFSG
FNPDLVTTVW VGFDDHGREL GRTAWNANGA KDQISGAEAG AKTAGPAWNE FMFMALADTP
EKPMPVPAGI VSARIDYSSG KLSRRTDYTS GFEYFAAGTV PTDYANSAIA EDDTTAPETT
ADDLFQ
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