Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_3369 |
Symbol | |
ID | 4605616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3994976 |
End bp | 3997033 |
Gene Length | 2058 bp |
Protein Length | 685 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639782789 |
Product | type IV pilus biogenesis protein PilQ |
Protein accession | YP_929241 |
Protein GI | 119776501 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000110691 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAATCTT CTGCCGCGTT CATAACACGC ACCAACAAGC CGGGGTTGGC AAAAGCCTTG GTAGGTATTG CGTTGTTTTT CGGTGTAACC ACAGCAGCCG TAGCGGCCAA TCGGCTGGTC GATGTTAAAT ATCACTCGGT GATAGACAGC CAATTGGAAC TCGAGTTGGT GTTTGAAAAC CCCATTGTTG AGCCTGAGAT CAATCTCAAT GCGACACCGG CTCAAATACT GCTTTCATTT GATGACAGTA TTTCCGGACT GGCGACAAAC GCACTGCCAG TTAACCGAGG CGGTGTCACA GAGGTGAATA CTCAGCAGCA GGACTCAGAT TTAGTGGTTG GCGTGAATCT GTCCAAGGTA CTTCCTTACC AAGGTGCCGT GGTCGGTAAC AGCTATCGCT TAACGGTAAA TGATGCGGTG GTTTCCAAAG CCACTGATAC CAATTCGTCA TCCAGTGCTT ACGTTAACGG CATTAAAAAT ATTGATTTTC GTCGTAACGG TAAGGGTGGC GGCGAGCTTA TTGTTCAGCT GAATAACACC AAGGTTGCGG CCAATGTCGA ACAAATTGGC GCCAAGTTAG AGGTGAAGTT TTTTAACACA GACATTCCAA AAGACATGTT GTATGTCATG GATGTGCAGG ACTTTGCTAC TCCGGTAAAG AGCTTTGAAA CTTTTAAGGA AGACTTGGTT ACCCGTATTC AGGTCGATAT TGGCGGTGAG TACGAATACA ACTACGTTCA GGAAGCCAGT CAGTTCAAAC TGTCAATGAA CAAGGTTGTA CGTCAGGCAT CTGTGAAGCA GGAAAAGAAA TATAACGGCA AGACTTTGTC GTTGAATTTC CAAAATATTT CTGTGCGTAC CGTGCTGCAG TTAATTGCCG ACTACAACAA CTTCAATCTG GTAACCAGTG ATTCGGTTCA GGGCGACATT ACCTTGGTTC TGGACGACGT TCCGTGGGAC CAAGCACTCG ATTTAATCCT GAAAACTAAA GGGCTGGATA AACGCATTGA AGGTAACATC CTGATGGTCG CTCCAGCTGA AGAGCTTGCC GTACGTGAAA GTATGGAACT GCGCAACCAA CAGGAAGTGC AGGAGCTGGC GCCACTCTAT TCCGAGTACA TGCAAATCAA CTACGCCAAA GCGACTGATA TTGCAGAGCT GCTGAAAAGC GAAGGTTCGA GCCTGCTTAG TGATAGAGGT AGTGTCGCGG TTGATGAGCG CACTAACACT CTGCTGGTTA AAGATACTGC TGAGACGCTG GTAAATGTGC AGCGCATGAT AGAAGTGCTT GATATCCCAA TTCGTCAGGT ACTGATAGAA TCCCGCATGG TGACCGTGAA GGATAACGTC GCGGAAGACT TGGGTATCCG TTGGGGGGTC ACCGATCAGC AAGGCACCAA GGGGACCTCG GGTTCACTCG AAGGTGCTGA GAGTATTGCT GGCGGCGTCA TTCCGGCCAT CAGCGACCGT TTGAATGTTA ACTTGCCAGC GCCCACCAAT GCCGCCAGTA TTGCTTTTCA CGTCGCAAAA CTTGCCGATG GCACCGTATT GGACATGGAG CTAAGTGCAT TAGAGCAGGA AAACAAGGGT GAAATTATAG CAAGCCCGCG TATCACCACC TCGAATCAAA AAGCTGCGTA TATCGAGCAG GGTGTTGAAA TTCCTTATGT ATCAGCCTCT TCCAGCGGTT CTACGACGGT TGAGTTCAAG AAGGCGGTGC TATCTCTTCG CGTTACGCCG CAAATCACTC CGGATAATCG AGTTATTCTG GATTTGGAAA TCACCCAAGA CAGTCGCGGT GAAACAGTAG ATACTGCGAC CGGCCGCGCT GTGGCAATCG ATACGCAGCG TATTGGTACT CAAGTGCTGG TAGACAACGG TGAAACCATA GTGCTGGGTG GTATCTACCA GCAAAATCTT ATCAGCCGCG TGAGCAAGGT TCCGGTCTTG GGTGATATTC CCCTGGTGGG ATTCCTGTTC CGCAACACGT CAGATAAAAA TGAACGTCAG GAACTGCTTA TCTTCGTGAC GCCTAAAATC GTGACAGAAA AAATCTGA
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Protein sequence | MESSAAFITR TNKPGLAKAL VGIALFFGVT TAAVAANRLV DVKYHSVIDS QLELELVFEN PIVEPEINLN ATPAQILLSF DDSISGLATN ALPVNRGGVT EVNTQQQDSD LVVGVNLSKV LPYQGAVVGN SYRLTVNDAV VSKATDTNSS SSAYVNGIKN IDFRRNGKGG GELIVQLNNT KVAANVEQIG AKLEVKFFNT DIPKDMLYVM DVQDFATPVK SFETFKEDLV TRIQVDIGGE YEYNYVQEAS QFKLSMNKVV RQASVKQEKK YNGKTLSLNF QNISVRTVLQ LIADYNNFNL VTSDSVQGDI TLVLDDVPWD QALDLILKTK GLDKRIEGNI LMVAPAEELA VRESMELRNQ QEVQELAPLY SEYMQINYAK ATDIAELLKS EGSSLLSDRG SVAVDERTNT LLVKDTAETL VNVQRMIEVL DIPIRQVLIE SRMVTVKDNV AEDLGIRWGV TDQQGTKGTS GSLEGAESIA GGVIPAISDR LNVNLPAPTN AASIAFHVAK LADGTVLDME LSALEQENKG EIIASPRITT SNQKAAYIEQ GVEIPYVSAS SSGSTTVEFK KAVLSLRVTP QITPDNRVIL DLEITQDSRG ETVDTATGRA VAIDTQRIGT QVLVDNGETI VLGGIYQQNL ISRVSKVPVL GDIPLVGFLF RNTSDKNERQ ELLIFVTPKI VTEKI
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