Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_3309 |
Symbol | |
ID | 4605556 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 3938306 |
End bp | 3939292 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639782729 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_929181 |
Protein GI | 119776441 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.647593 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGTGCCT TCGAGTTTCA GCAATTTGTT GAACCCTGTG TGCACCTGGT GCTGGCAATG ATGGTGCTTG TGCTGAACCG CTATAAGGCG TCGTTCAAGC TCACACACCA GGTGCTGGTG GTGGCCTTTA TCATGGCCCT GGTGGGGATA GTCGGCCTGA CGCGTTATGG GCTCTTCAGT GCCGGGTTGA TCTGGTTGCT GTTTTCCGCT TTGAGTATGA CCTTTTTTTT CCCCCGCCTC GCACGCAAAC TGATTATCGC CTTTGTTTGC ACGGCACTGT TCTTCGCCCT GGCCCATTCC CGGCAGTGGT TTGACATCAC CAGGACTGTC AGCCCGGAGA ACGCCGCCAG AAGCATTGTG GTGTGGTTGT CGGTCATACT GCCATTTGCA ATTTTGTTGT ATTCCTTTTC CAAAGCCGTG GGTGATGCCT ATAAAGAAAT GCGCCAGGAT AAGCTCAATC TTGGCATTAG AAACAAAGAA TTACACAGCA AGGCCCACAC GGACACCCTA ACTGAGCTCC CCAACAGGGC CTTTTTTTAC CAACAACTGT TACAGAAAAC CCAGCAACCG GGGCTGGCAA ACGCCGGCTT GGCGCTACTG TTTATCGACC TGGATGGATT TAAAGCGATT AACGACACCT GGGGGCACGA GGCAGGCGAC ACAGTACTGC GTATTACCGC CTGGCGCATG CAGCATCGGC TGCGCGACTC TGACATTATT TGCCGTCTTG GGGGTGATGA GTTTGTGCTG CTGTGTAACA ACATTAGTTC AAAAGCGGCT TTGGCGAGTT TCGCCGAGCA AATCAATGTC ACTGTGACTG CGTCTATCGA TTTGCCCGAA ACGCTGGTGA ATTTGTCCTG CAGCATCGGC GGCGTATTGC TCCCCGAAGA TGGCAGCGAT ATCGATGCCC TGCTTTCTCT GGCAGACAAG CGTATGTACA GGGCCAAAAA GGCCGGGAAA AACCAATACT GCTTAACGGA CGAGTAA
|
Protein sequence | MRAFEFQQFV EPCVHLVLAM MVLVLNRYKA SFKLTHQVLV VAFIMALVGI VGLTRYGLFS AGLIWLLFSA LSMTFFFPRL ARKLIIAFVC TALFFALAHS RQWFDITRTV SPENAARSIV VWLSVILPFA ILLYSFSKAV GDAYKEMRQD KLNLGIRNKE LHSKAHTDTL TELPNRAFFY QQLLQKTQQP GLANAGLALL FIDLDGFKAI NDTWGHEAGD TVLRITAWRM QHRLRDSDII CRLGGDEFVL LCNNISSKAA LASFAEQINV TVTASIDLPE TLVNLSCSIG GVLLPEDGSD IDALLSLADK RMYRAKKAGK NQYCLTDE
|
| |